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Mutant Information

Mutant Name	FN464-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN464-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12420528 C-T Homo INTRON
SBS Chr1 26247823 G-A Homo INTRON
SBS Chr2 783503 T-C Hetero INTERGENIC
SBS Chr2 1270316 T-C Hetero UTR_3_PRIME
SBS Chr2 4285844 G-A Hetero INTERGENIC
SBS Chr2 5146434 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g071200
SBS Chr2 12286796 A-T Hetero INTERGENIC
SBS Chr2 25335818 T-C Hetero INTERGENIC
SBS Chr2 29893652 G-A Hetero UTR_5_PRIME
SBS Chr3 4697285 G-T Hetero UTR_5_PRIME
SBS Chr3 22060442 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g241258
SBS Chr3 26838692 G-C Homo INTERGENIC
SBS Chr3 27062035 G-A Homo INTRON
SBS Chr3 35741159 T-C Homo INTERGENIC
SBS Chr4 13613794 C-G Hetero INTERGENIC
SBS Chr4 13998750 C-T Hetero INTERGENIC
SBS Chr4 28138352 C-G Hetero INTERGENIC
SBS Chr5 10708473 A-C Hetero INTERGENIC
SBS Chr5 16367600 C-T Hetero INTERGENIC
SBS Chr5 19776587 A-G Hetero INTRON
SBS Chr5 25811822 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g227000
SBS Chr5 26599900 T-A Hetero INTERGENIC
SBS Chr6 5730833 C-T Hetero INTERGENIC
SBS Chr6 13225354 G-A Hetero INTERGENIC
SBS Chr7 3681156 A-G Hetero INTERGENIC
SBS Chr7 20820827 T-A Hetero INTERGENIC
SBS Chr7 24077217 G-A Hetero INTERGENIC
SBS Chr7 27049175 C-T Homo INTRON
SBS Chr8 19526571 G-T Hetero INTERGENIC
SBS Chr8 21392210 G-T Hetero INTRON
SBS Chr8 28192140 T-C Hetero INTRON
SBS Chr8 28518963 A-G Hetero INTRON
SBS Chr10 15806986 C-T Hetero INTERGENIC
SBS Chr12 25731901 A-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 663004 663016 12
Deletion Chr1 3704936 3704937 1 OsKitaake01g049400
Deletion Chr11 5911507 5911508 1
Deletion Chr10 9446458 9446459 1
Deletion Chr10 10338590 10338712 122
Deletion Chr8 17906001 18016000 109999 5
Deletion Chr2 23543378 23543379 1
Deletion Chr5 25237530 25237532 2
Deletion Chr5 25705064 25705067 3
Deletion Chr3 30780001 30804000 23999 OsKitaake03g323200
Deletion Chr3 31342660 31342667 7
Deletion Chr1 41148124 41148126 2
Deletion Chr1 42205944 42205949 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26680992 26680996 3
Insertion Chr4 25129132 25129136 3
Insertion Chr12 95794 95797 2
Insertion Chr8 17299694 17299698 3
Insertion Chr9 2667591 2667595 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1888640 1888923
Inversion Chr3 6167706 6519239 2
Inversion Chr3 6167718 6519240 2
Inversion Chr3 30775979 31249203 OsKitaake03g328900
Inversion Chr3 30803562 31249312 OsKitaake03g328900

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9795009 Chr3 30775990
Translocation Chr11 9795016 Chr3 30803550
Translocation Chr8 13745753 Chr3 31249303 OsKitaake03g328900
Translocation Chr10 23356942 Chr2 852684 OsKitaake10g198700
Translocation Chr10 23357070 Chr2 843023 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12420528	C-T	Homo	INTRON
SBS	Chr1	26247823	G-A	Homo	INTRON
SBS	Chr2	783503	T-C	Hetero	INTERGENIC
SBS	Chr2	1270316	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	4285844	G-A	Hetero	INTERGENIC
SBS	Chr2	5146434	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g071200
SBS	Chr2	12286796	A-T	Hetero	INTERGENIC
SBS	Chr2	25335818	T-C	Hetero	INTERGENIC
SBS	Chr2	29893652	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	4697285	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	22060442	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241258
SBS	Chr3	26838692	G-C	Homo	INTERGENIC
SBS	Chr3	27062035	G-A	Homo	INTRON
SBS	Chr3	35741159	T-C	Homo	INTERGENIC
SBS	Chr4	13613794	C-G	Hetero	INTERGENIC
SBS	Chr4	13998750	C-T	Hetero	INTERGENIC
SBS	Chr4	28138352	C-G	Hetero	INTERGENIC
SBS	Chr5	10708473	A-C	Hetero	INTERGENIC
SBS	Chr5	16367600	C-T	Hetero	INTERGENIC
SBS	Chr5	19776587	A-G	Hetero	INTRON
SBS	Chr5	25811822	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g227000
SBS	Chr5	26599900	T-A	Hetero	INTERGENIC
SBS	Chr6	5730833	C-T	Hetero	INTERGENIC
SBS	Chr6	13225354	G-A	Hetero	INTERGENIC
SBS	Chr7	3681156	A-G	Hetero	INTERGENIC
SBS	Chr7	20820827	T-A	Hetero	INTERGENIC
SBS	Chr7	24077217	G-A	Hetero	INTERGENIC
SBS	Chr7	27049175	C-T	Homo	INTRON
SBS	Chr8	19526571	G-T	Hetero	INTERGENIC
SBS	Chr8	21392210	G-T	Hetero	INTRON
SBS	Chr8	28192140	T-C	Hetero	INTRON
SBS	Chr8	28518963	A-G	Hetero	INTRON
SBS	Chr10	15806986	C-T	Hetero	INTERGENIC
SBS	Chr12	25731901	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	663004	663016	12
Deletion	Chr1	3704936	3704937	1	OsKitaake01g049400
Deletion	Chr11	5911507	5911508	1
Deletion	Chr10	9446458	9446459	1
Deletion	Chr10	10338590	10338712	122
Deletion	Chr8	17906001	18016000	109999	5
Deletion	Chr2	23543378	23543379	1
Deletion	Chr5	25237530	25237532	2
Deletion	Chr5	25705064	25705067	3
Deletion	Chr3	30780001	30804000	23999	OsKitaake03g323200
Deletion	Chr3	31342660	31342667	7
Deletion	Chr1	41148124	41148126	2
Deletion	Chr1	42205944	42205949	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1888640	1888923
Inversion	Chr3	6167706	6519239	2
Inversion	Chr3	6167718	6519240	2
Inversion	Chr3	30775979	31249203	OsKitaake03g328900
Inversion	Chr3	30803562	31249312	OsKitaake03g328900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes