Search Kitaake

Mutant Information

Mutant Name	FN465-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN465-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14651415 A-G Hetero INTERGENIC
SBS Chr1 25412976 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g246300
SBS Chr1 28267466 T-C Homo INTERGENIC
SBS Chr2 93857 A-T Hetero INTRON
SBS Chr2 1962962 T-G Homo INTERGENIC
SBS Chr2 25484849 G-T Homo INTERGENIC
SBS Chr2 27602097 G-A Homo INTERGENIC
SBS Chr2 29903246 A-G Hetero INTRON
SBS Chr2 36681880 A-T Hetero INTERGENIC
SBS Chr3 9898401 G-A Hetero INTERGENIC
SBS Chr3 9990506 G-C Hetero INTERGENIC
SBS Chr3 13886681 C-G Hetero INTERGENIC
SBS Chr4 17518615 G-A Hetero INTERGENIC
SBS Chr4 18964347 G-A Hetero INTERGENIC
SBS Chr4 27757595 C-A Homo INTRON
SBS Chr4 35443963 G-A Hetero INTRON
SBS Chr5 19520350 G-A Hetero INTERGENIC
SBS Chr5 25005583 G-A Hetero INTERGENIC
SBS Chr5 27699657 C-G Homo NON_SYNONYMOUS_CODING OsKitaake05g253200
SBS Chr5 27699658 C-T Homo SYNONYMOUS_CODING
SBS Chr5 27699659 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g253200
SBS Chr6 2561189 T-C Hetero UTR_5_PRIME
SBS Chr6 13679495 G-A Hetero INTERGENIC
SBS Chr6 14642771 T-A Hetero INTERGENIC
SBS Chr6 20699093 C-T Hetero INTRON
SBS Chr7 15690047 A-G Homo INTERGENIC
SBS Chr7 15965164 G-T Hetero INTERGENIC
SBS Chr7 19871997 C-G Hetero INTRON
SBS Chr8 1237265 C-T Hetero INTERGENIC
SBS Chr8 7565082 A-G Hetero INTERGENIC
SBS Chr8 8145849 G-A Hetero INTERGENIC
SBS Chr8 22013668 T-A Hetero SYNONYMOUS_CODING
SBS Chr9 6320403 A-C Hetero INTRON
SBS Chr9 19126380 G-C Homo INTRON
SBS Chr10 1406861 A-C Hetero INTERGENIC
SBS Chr10 8968688 C-T Hetero INTERGENIC
SBS Chr10 14143263 A-T Hetero INTERGENIC
SBS Chr11 5389679 G-C Homo INTERGENIC
SBS Chr11 9359513 G-A Hetero INTERGENIC
SBS Chr12 21351013 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2040854 2040869 15 OsKitaake02g030900
Deletion Chr4 5448383 5448384 1
Deletion Chr11 11894148 11894149 1
Deletion Chr4 12415001 12444000 28999
Deletion Chr5 12721501 12721502 1
Deletion Chr2 14863424 14863425 1
Deletion Chr3 16994540 16994549 9
Deletion Chr4 17518291 17518294 3
Deletion Chr9 19848234 19848240 6
Deletion Chr4 21118019 21118025 6
Deletion Chr8 22697129 22697141 12
Deletion Chr8 26235253 26235255 2
Deletion Chr4 27524713 27524718 5
Deletion Chr8 27680422 27680439 17
Deletion Chr5 27690144 27690148 4
Deletion Chr2 29830062 29830064 2
Deletion Chr3 35183966 35183973 7
Deletion Chr2 35833001 35882000 48999 11
Deletion Chr3 37486187 37486198 11

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 27121662 27121667 4
Insertion Chr4 28823629 28823631 1
Insertion Chr7 4669078 4669084 5
Insertion Chr7 15393591 15393595 3
Insertion Chr5 12464015 12464017 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18837258 18901974
Inversion Chr5 18837265 18901969
Inversion Chr6 20908959 20918114
Inversion Chr6 20909003 20918120

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 90792 Chr1 20969158 OsKitaake01g205200
Translocation Chr2 91053 Chr1 20969150 OsKitaake01g205200
Translocation Chr8 8533033 Chr2 17478365 2
Translocation Chr8 8533050 Chr2 17477346 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14651415	A-G	Hetero	INTERGENIC
SBS	Chr1	25412976	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g246300
SBS	Chr1	28267466	T-C	Homo	INTERGENIC
SBS	Chr2	93857	A-T	Hetero	INTRON
SBS	Chr2	1962962	T-G	Homo	INTERGENIC
SBS	Chr2	25484849	G-T	Homo	INTERGENIC
SBS	Chr2	27602097	G-A	Homo	INTERGENIC
SBS	Chr2	29903246	A-G	Hetero	INTRON
SBS	Chr2	36681880	A-T	Hetero	INTERGENIC
SBS	Chr3	9898401	G-A	Hetero	INTERGENIC
SBS	Chr3	9990506	G-C	Hetero	INTERGENIC
SBS	Chr3	13886681	C-G	Hetero	INTERGENIC
SBS	Chr4	17518615	G-A	Hetero	INTERGENIC
SBS	Chr4	18964347	G-A	Hetero	INTERGENIC
SBS	Chr4	27757595	C-A	Homo	INTRON
SBS	Chr4	35443963	G-A	Hetero	INTRON
SBS	Chr5	19520350	G-A	Hetero	INTERGENIC
SBS	Chr5	25005583	G-A	Hetero	INTERGENIC
SBS	Chr5	27699657	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g253200
SBS	Chr5	27699658	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27699659	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g253200
SBS	Chr6	2561189	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	13679495	G-A	Hetero	INTERGENIC
SBS	Chr6	14642771	T-A	Hetero	INTERGENIC
SBS	Chr6	20699093	C-T	Hetero	INTRON
SBS	Chr7	15690047	A-G	Homo	INTERGENIC
SBS	Chr7	15965164	G-T	Hetero	INTERGENIC
SBS	Chr7	19871997	C-G	Hetero	INTRON
SBS	Chr8	1237265	C-T	Hetero	INTERGENIC
SBS	Chr8	7565082	A-G	Hetero	INTERGENIC
SBS	Chr8	8145849	G-A	Hetero	INTERGENIC
SBS	Chr8	22013668	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	6320403	A-C	Hetero	INTRON
SBS	Chr9	19126380	G-C	Homo	INTRON
SBS	Chr10	1406861	A-C	Hetero	INTERGENIC
SBS	Chr10	8968688	C-T	Hetero	INTERGENIC
SBS	Chr10	14143263	A-T	Hetero	INTERGENIC
SBS	Chr11	5389679	G-C	Homo	INTERGENIC
SBS	Chr11	9359513	G-A	Hetero	INTERGENIC
SBS	Chr12	21351013	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2040854	2040869	15	OsKitaake02g030900
Deletion	Chr4	5448383	5448384	1
Deletion	Chr11	11894148	11894149	1
Deletion	Chr4	12415001	12444000	28999
Deletion	Chr5	12721501	12721502	1
Deletion	Chr2	14863424	14863425	1
Deletion	Chr3	16994540	16994549	9
Deletion	Chr4	17518291	17518294	3
Deletion	Chr9	19848234	19848240	6
Deletion	Chr4	21118019	21118025	6
Deletion	Chr8	22697129	22697141	12
Deletion	Chr8	26235253	26235255	2
Deletion	Chr4	27524713	27524718	5
Deletion	Chr8	27680422	27680439	17
Deletion	Chr5	27690144	27690148	4
Deletion	Chr2	29830062	29830064	2
Deletion	Chr3	35183966	35183973	7
Deletion	Chr2	35833001	35882000	48999	11
Deletion	Chr3	37486187	37486198	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18837258	18901974
Inversion	Chr5	18837265	18901969
Inversion	Chr6	20908959	20918114
Inversion	Chr6	20909003	20918120

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes