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Mutant Information

Mutant Name	FN466-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN466-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1239352 C-T Hetero INTERGENIC
SBS Chr1 12676597 G-C Hetero INTERGENIC
SBS Chr1 15719810 T-C Hetero INTERGENIC
SBS Chr1 37230064 A-C Homo INTERGENIC
SBS Chr3 10624624 T-C Hetero INTERGENIC
SBS Chr3 15021514 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g195100
SBS Chr3 15021515 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g195100
SBS Chr3 16003882 C-T Hetero UTR_3_PRIME
SBS Chr3 25154179 G-T Hetero INTERGENIC
SBS Chr3 28217916 G-T Hetero UTR_3_PRIME
SBS Chr4 22755744 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g135900
SBS Chr4 36213999 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g313200
SBS Chr5 4847504 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 26373671 T-C Hetero INTERGENIC
SBS Chr6 7104312 T-A Hetero INTERGENIC
SBS Chr7 4685097 G-C Hetero INTERGENIC
SBS Chr7 8629322 A-G Hetero INTERGENIC
SBS Chr7 9221102 C-T Hetero INTRON
SBS Chr7 16565746 G-A Hetero INTERGENIC
SBS Chr7 18816870 G-T Hetero INTERGENIC
SBS Chr7 19753521 G-A Hetero INTERGENIC
SBS Chr8 7978546 G-A Hetero UTR_3_PRIME
SBS Chr8 19168066 C-T Hetero INTERGENIC
SBS Chr9 8538031 T-A Hetero INTERGENIC
SBS Chr9 19770617 C-A Homo INTERGENIC
SBS Chr9 21852618 T-G Hetero INTRON
SBS Chr10 2104154 G-A Hetero INTERGENIC
SBS Chr10 9546828 T-C Homo INTRON
SBS Chr10 13498567 A-T Hetero INTRON
SBS Chr11 2775230 A-T Homo NON_SYNONYMOUS_CODING OsKitaake11g039100
SBS Chr11 8157679 G-A Hetero INTERGENIC
SBS Chr11 13492178 C-G Hetero INTERGENIC
SBS Chr11 15443806 G-C Hetero INTERGENIC
SBS Chr11 16861819 C-T Hetero INTERGENIC
SBS Chr11 24562685 G-A Hetero INTERGENIC
SBS Chr11 26582411 T-A Homo INTERGENIC
SBS Chr12 6361971 A-G Hetero INTERGENIC
SBS Chr12 14343655 C-T Hetero INTERGENIC
SBS Chr12 20792810 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr1 7744446 7744459 13
Deletion Chr10 9006507 9006515 8
Deletion Chr6 9230816 9230819 3
Deletion Chr10 10242544 10242547 3
Deletion Chr3 14718217 14718224 7
Deletion Chr7 19298734 19298743 9
Deletion Chr9 21855476 21855477 1 OsKitaake09g193400
Deletion Chr5 25307807 25307811 4 OsKitaake05g220600
Deletion Chr4 34106001 34230000 123999 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 21345116 21345119 2
Insertion Chr11 2031959 2031962 2
Insertion Chr3 35079572 35079575 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3391874 3800470 OsKitaake08g043600
Inversion Chr8 3391878 3800473 OsKitaake08g043600
Inversion Chr12 3501887 3826270 2
Inversion Chr12 3501992 3826283 2
Inversion Chr1 15145185 15159375 2
Inversion Chr1 15145376 15160734 2
Inversion Chr1 29855204 30848778 OsKitaake01g293300

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9069689 Chr4 34231294 OsKitaake09g052900
Translocation Chr10 10297982 Chr1 29855204 OsKitaake01g293300
Translocation Chr10 10298865 Chr1 30848776
Translocation Chr8 27936684 Chr1 15160707 OsKitaake01g144100
Translocation Chr8 27936694 Chr1 15159375 OsKitaake01g144100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1239352	C-T	Hetero	INTERGENIC
SBS	Chr1	12676597	G-C	Hetero	INTERGENIC
SBS	Chr1	15719810	T-C	Hetero	INTERGENIC
SBS	Chr1	37230064	A-C	Homo	INTERGENIC
SBS	Chr3	10624624	T-C	Hetero	INTERGENIC
SBS	Chr3	15021514	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g195100
SBS	Chr3	15021515	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g195100
SBS	Chr3	16003882	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	25154179	G-T	Hetero	INTERGENIC
SBS	Chr3	28217916	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	22755744	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g135900
SBS	Chr4	36213999	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g313200
SBS	Chr5	4847504	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	26373671	T-C	Hetero	INTERGENIC
SBS	Chr6	7104312	T-A	Hetero	INTERGENIC
SBS	Chr7	4685097	G-C	Hetero	INTERGENIC
SBS	Chr7	8629322	A-G	Hetero	INTERGENIC
SBS	Chr7	9221102	C-T	Hetero	INTRON
SBS	Chr7	16565746	G-A	Hetero	INTERGENIC
SBS	Chr7	18816870	G-T	Hetero	INTERGENIC
SBS	Chr7	19753521	G-A	Hetero	INTERGENIC
SBS	Chr8	7978546	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	19168066	C-T	Hetero	INTERGENIC
SBS	Chr9	8538031	T-A	Hetero	INTERGENIC
SBS	Chr9	19770617	C-A	Homo	INTERGENIC
SBS	Chr9	21852618	T-G	Hetero	INTRON
SBS	Chr10	2104154	G-A	Hetero	INTERGENIC
SBS	Chr10	9546828	T-C	Homo	INTRON
SBS	Chr10	13498567	A-T	Hetero	INTRON
SBS	Chr11	2775230	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g039100
SBS	Chr11	8157679	G-A	Hetero	INTERGENIC
SBS	Chr11	13492178	C-G	Hetero	INTERGENIC
SBS	Chr11	15443806	G-C	Hetero	INTERGENIC
SBS	Chr11	16861819	C-T	Hetero	INTERGENIC
SBS	Chr11	24562685	G-A	Hetero	INTERGENIC
SBS	Chr11	26582411	T-A	Homo	INTERGENIC
SBS	Chr12	6361971	A-G	Hetero	INTERGENIC
SBS	Chr12	14343655	C-T	Hetero	INTERGENIC
SBS	Chr12	20792810	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr1	7744446	7744459	13
Deletion	Chr10	9006507	9006515	8
Deletion	Chr6	9230816	9230819	3
Deletion	Chr10	10242544	10242547	3
Deletion	Chr3	14718217	14718224	7
Deletion	Chr7	19298734	19298743	9
Deletion	Chr9	21855476	21855477	1	OsKitaake09g193400
Deletion	Chr5	25307807	25307811	4	OsKitaake05g220600
Deletion	Chr4	34106001	34230000	123999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3391874	3800470	OsKitaake08g043600
Inversion	Chr8	3391878	3800473	OsKitaake08g043600
Inversion	Chr12	3501887	3826270	2
Inversion	Chr12	3501992	3826283	2
Inversion	Chr1	15145185	15159375	2
Inversion	Chr1	15145376	15160734	2
Inversion	Chr1	29855204	30848778	OsKitaake01g293300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes