Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4668-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4668-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 50
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9234099 | C-A | HOMO | ||
| SBS | Chr1 | 12178767 | G-A | HET | ||
| SBS | Chr1 | 16409990 | C-T | HET | ||
| SBS | Chr1 | 19969926 | G-A | HET | ||
| SBS | Chr1 | 24132134 | G-A | HET | ||
| SBS | Chr1 | 25172559 | G-T | HET | ||
| SBS | Chr1 | 25172560 | C-T | HET | ||
| SBS | Chr1 | 44040447 | A-G | HET | ||
| SBS | Chr1 | 44165630 | A-G | HOMO | ||
| SBS | Chr2 | 6839079 | A-G | HET | ||
| SBS | Chr2 | 9406228 | C-G | HOMO | ||
| SBS | Chr2 | 12949434 | C-T | HOMO | ||
| SBS | Chr2 | 14593136 | G-T | HET | ||
| SBS | Chr2 | 26767351 | A-G | HET | ||
| SBS | Chr2 | 29804149 | G-A | HET | ||
| SBS | Chr2 | 31997671 | C-G | HET | ||
| SBS | Chr3 | 21289535 | A-G | HET | ||
| SBS | Chr3 | 22361280 | G-A | HET | ||
| SBS | Chr3 | 26866305 | C-T | HET | ||
| SBS | Chr4 | 392096 | A-G | HOMO | ||
| SBS | Chr4 | 10990741 | G-A | HET | ||
| SBS | Chr4 | 12883898 | C-T | HOMO | ||
| SBS | Chr4 | 23648906 | C-T | HET | ||
| SBS | Chr4 | 24451407 | C-A | HET | ||
| SBS | Chr4 | 26826980 | C-A | HET | ||
| SBS | Chr4 | 28699826 | C-T | HET | ||
| SBS | Chr4 | 33458636 | C-T | HET | ||
| SBS | Chr5 | 3226208 | T-C | HOMO | ||
| SBS | Chr5 | 16895038 | C-T | HOMO | ||
| SBS | Chr5 | 19296046 | A-T | HET | ||
| SBS | Chr5 | 21133253 | C-T | HET | ||
| SBS | Chr5 | 23762441 | G-T | HET | ||
| SBS | Chr5 | 23965102 | G-T | HET | ||
| SBS | Chr6 | 4277285 | G-A | HOMO | ||
| SBS | Chr6 | 24816731 | G-A | HET | ||
| SBS | Chr7 | 10325622 | C-T | HET | ||
| SBS | Chr7 | 18267567 | C-T | HET | ||
| SBS | Chr7 | 26897690 | C-T | HET | ||
| SBS | Chr7 | 27514368 | A-C | HET | ||
| SBS | Chr7 | 28353713 | T-C | HET | ||
| SBS | Chr8 | 12327065 | G-A | HOMO | ||
| SBS | Chr8 | 12327066 | C-A | HOMO | ||
| SBS | Chr8 | 12327067 | T-A | HOMO | ||
| SBS | Chr9 | 21656329 | G-A | HET | ||
| SBS | Chr10 | 5858198 | C-G | HOMO | ||
| SBS | Chr10 | 7123582 | G-T | HET | ||
| SBS | Chr10 | 8584402 | T-C | HET | ||
| SBS | Chr11 | 9716509 | C-T | HET | ||
| SBS | Chr11 | 25014273 | G-A | HET | ||
| SBS | Chr12 | 16614206 | A-T | HET |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 265388 | 265389 | 2 | |
| Deletion | Chr4 | 1528492 | 1528499 | 8 | |
| Deletion | Chr3 | 3341116 | 3341116 | 1 | |
| Deletion | Chr9 | 4168642 | 4168648 | 7 | |
| Deletion | Chr11 | 5169430 | 5169439 | 10 | |
| Deletion | Chr12 | 8258738 | 8258741 | 4 | OsKitaake12g085900 |
| Deletion | Chr1 | 9499300 | 9499303 | 4 | |
| Deletion | Chr12 | 9814001 | 10070000 | 256000 | 12 |
| Deletion | Chr10 | 9855315 | 9855317 | 3 | |
| Deletion | Chr8 | 11785290 | 11785290 | 1 | |
| Deletion | Chr11 | 13746177 | 13746177 | 1 | |
| Deletion | Chr10 | 14390467 | 14390472 | 6 | |
| Deletion | Chr3 | 16514001 | 16551000 | 37000 | OsKitaake03g209300 |
| Deletion | Chr10 | 18099337 | 18099340 | 4 | |
| Deletion | Chr12 | 26611597 | 26611598 | 2 | |
| Deletion | Chr3 | 29743001 | 29756000 | 13000 | 4 |
| Deletion | Chr1 | 35987001 | 36037000 | 50000 | 7 |
| Deletion | Chr1 | 36039001 | 36210000 | 171000 | 23 |
| Deletion | Chr1 | 36212001 | 36308000 | 96000 | 8 |
| Deletion | Chr2 | 36265451 | 36265451 | 1 |
Insertions: 8
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 1408572 | 1637772 | 2 |
| Inversion | Chr4 | 12350107 | 13158646 | |
| Inversion | Chr2 | 36064613 | 36898100 | |
| Inversion | Chr2 | 36064620 | 36898108 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 1408563 | Chr3 | 16566496 | OsKitaake07g020000 |
| Translocation | Chr7 | 1637771 | Chr1 | 33445846 | 2 |
| Translocation | Chr7 | 2884668 | Chr3 | 16567051 | OsKitaake07g036700 |
| Translocation | Chr7 | 2884676 | Chr1 | 33445838 | 2 |
| Translocation | Chr7 | 2885017 | Chr3 | 16551075 | OsKitaake07g036800 |
| Translocation | Chr7 | 2885024 | Chr3 | 16566520 | OsKitaake07g036800 |
| Translocation | Chr12 | 8259461 | Chr1 | 36308927 |