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Mutant Information

Mutant Name	FN467-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN467-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6493567 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g082000
SBS Chr1 26416455 G-A Hetero INTERGENIC
SBS Chr1 34978028 T-C Homo INTERGENIC
SBS Chr2 18178723 G-A Hetero INTERGENIC
SBS Chr2 35788732 A-T Hetero INTERGENIC
SBS Chr3 9815944 G-C Hetero INTERGENIC
SBS Chr3 28993095 T-G Hetero INTERGENIC
SBS Chr4 2129422 G-A Hetero INTERGENIC
SBS Chr4 7821936 C-A Hetero INTERGENIC
SBS Chr4 7964998 G-A Homo INTERGENIC
SBS Chr4 16230172 G-A Hetero INTERGENIC
SBS Chr4 21674488 T-C Homo INTERGENIC
SBS Chr4 23185367 G-A Homo INTERGENIC
SBS Chr5 1083903 G-A Homo INTRON
SBS Chr5 7732888 A-G Hetero INTERGENIC
SBS Chr5 13967379 A-T Homo INTRON
SBS Chr5 28111120 T-A Hetero INTRON
SBS Chr5 28327626 C-T Hetero UTR_3_PRIME
SBS Chr5 28327632 C-T Hetero UTR_3_PRIME
SBS Chr6 20379947 T-C Homo INTERGENIC
SBS Chr6 28110069 A-T Hetero INTERGENIC
SBS Chr6 28798355 G-A Homo SYNONYMOUS_CODING
SBS Chr6 28877044 C-T Hetero INTERGENIC
SBS Chr7 9832495 T-A Hetero INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr8 5695104 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g062500
SBS Chr8 9916374 C-A Hetero INTERGENIC
SBS Chr9 4661275 G-C Homo INTERGENIC
SBS Chr9 13811844 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g093400
SBS Chr9 19383464 G-C Homo INTRON
SBS Chr9 21354396 C-T Homo INTRON
SBS Chr10 5795702 G-A Hetero INTRON
SBS Chr10 12941568 G-A Hetero INTERGENIC
SBS Chr12 1973075 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g030800
SBS Chr12 9533720 G-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7457 703
Deletion Chr11 3136273 3136274 1
Deletion Chr7 4527132 4527137 5
Deletion Chr2 4786125 4786140 15 OsKitaake02g066100
Deletion Chr12 6295001 6321000 25999 5
Deletion Chr9 7316257 7316258 1
Deletion Chr10 8118297 8118299 2
Deletion Chr4 8507065 8507066 1
Deletion Chr4 9278001 9294000 15999 OsKitaake04g048000
Deletion Chr11 11255007 11255008 1
Deletion Chr1 11735798 11735800 2
Deletion Chr1 13230999 13231003 4
Deletion Chr4 18828613 18828617 4
Deletion Chr5 20070993 20070999 6
Deletion Chr12 25811762 25811766 4
Deletion Chr3 28994001 29002000 7999
Deletion Chr2 32643895 32643903 8
Deletion Chr4 34748045 34748192 147

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 12106969 12106972 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 25636617 25942846 2
Inversion Chr1 25636622 25942855 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6294910 Chr9 12020848 OsKitaake09g076801
Translocation Chr12 6296257 Chr9 12020845 OsKitaake09g076801

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6493567	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g082000
SBS	Chr1	26416455	G-A	Hetero	INTERGENIC
SBS	Chr1	34978028	T-C	Homo	INTERGENIC
SBS	Chr2	18178723	G-A	Hetero	INTERGENIC
SBS	Chr2	35788732	A-T	Hetero	INTERGENIC
SBS	Chr3	9815944	G-C	Hetero	INTERGENIC
SBS	Chr3	28993095	T-G	Hetero	INTERGENIC
SBS	Chr4	2129422	G-A	Hetero	INTERGENIC
SBS	Chr4	7821936	C-A	Hetero	INTERGENIC
SBS	Chr4	7964998	G-A	Homo	INTERGENIC
SBS	Chr4	16230172	G-A	Hetero	INTERGENIC
SBS	Chr4	21674488	T-C	Homo	INTERGENIC
SBS	Chr4	23185367	G-A	Homo	INTERGENIC
SBS	Chr5	1083903	G-A	Homo	INTRON
SBS	Chr5	7732888	A-G	Hetero	INTERGENIC
SBS	Chr5	13967379	A-T	Homo	INTRON
SBS	Chr5	28111120	T-A	Hetero	INTRON
SBS	Chr5	28327626	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	28327632	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	20379947	T-C	Homo	INTERGENIC
SBS	Chr6	28110069	A-T	Hetero	INTERGENIC
SBS	Chr6	28798355	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	28877044	C-T	Hetero	INTERGENIC
SBS	Chr7	9832495	T-A	Hetero	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr8	5695104	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g062500
SBS	Chr8	9916374	C-A	Hetero	INTERGENIC
SBS	Chr9	4661275	G-C	Homo	INTERGENIC
SBS	Chr9	13811844	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g093400
SBS	Chr9	19383464	G-C	Homo	INTRON
SBS	Chr9	21354396	C-T	Homo	INTRON
SBS	Chr10	5795702	G-A	Hetero	INTRON
SBS	Chr10	12941568	G-A	Hetero	INTERGENIC
SBS	Chr12	1973075	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g030800
SBS	Chr12	9533720	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7457	703
Deletion	Chr11	3136273	3136274	1
Deletion	Chr7	4527132	4527137	5
Deletion	Chr2	4786125	4786140	15	OsKitaake02g066100
Deletion	Chr12	6295001	6321000	25999	5
Deletion	Chr9	7316257	7316258	1
Deletion	Chr10	8118297	8118299	2
Deletion	Chr4	8507065	8507066	1
Deletion	Chr4	9278001	9294000	15999	OsKitaake04g048000
Deletion	Chr11	11255007	11255008	1
Deletion	Chr1	11735798	11735800	2
Deletion	Chr1	13230999	13231003	4
Deletion	Chr4	18828613	18828617	4
Deletion	Chr5	20070993	20070999	6
Deletion	Chr12	25811762	25811766	4
Deletion	Chr3	28994001	29002000	7999
Deletion	Chr2	32643895	32643903	8
Deletion	Chr4	34748045	34748192	147

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25636617	25942846	2
Inversion	Chr1	25636622	25942855	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes