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| Mutant Information |
|---|
| Mutant Name | FN468-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN468-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5101787 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21845113 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22967229 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 37168720 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 42407491 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43237537 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 6914891 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 27467776 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22146750 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 28571154 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31676320 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 2102667 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 15332502 | G-C | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 24997334 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27073579 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27940620 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33579097 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 8997315 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12353065 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 21670529 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21698684 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 2068820 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24767236 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25208863 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25208864 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 10191624 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10786660 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17548224 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20801380 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 19794008 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g147400 |
| SBS | Chr11 | 1021346 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 7465826 | G-A | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 6064613 | 6064614 | 1 | |
| Deletion | Chr7 | 6138867 | 6138870 | 3 | OsKitaake07g072700 |
| Deletion | Chr8 | 9121001 | 9173000 | 51999 | 5 |
| Deletion | Chr5 | 11634161 | 11634172 | 11 | |
| Deletion | Chr3 | 11876193 | 11876195 | 2 | |
| Deletion | Chr11 | 21648825 | 21648829 | 4 | |
| Deletion | Chr1 | 30604342 | 30604358 | 16 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 35997318 | 35997321 | 2 | |
| Insertion | Chr5 | 9776846 | 9776849 | 2 | |
| Insertion | Chr7 | 14159851 | 14159853 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 17403093 | 17481509 | |
| Inversion | Chr1 | 17408607 | 17481514 | |
| Inversion | Chr7 | 25112073 | 25219306 | OsKitaake07g227400 |
| Inversion | Chr7 | 27383653 | 27530367 | OsKitaake07g256000 |
| Inversion | Chr7 | 27384867 | 27530539 | OsKitaake07g256000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 27530372 | Chr2 | 2791611 | 2 |
| Translocation | Chr7 | 27530522 | Chr2 | 2791543 | 2 |