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| Mutant Information |
|---|
| Mutant Name | FN4680-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4680-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 48
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5474008 | T-C | HOMO | ||
| SBS | Chr1 | 14868217 | C-A | HET | ||
| SBS | Chr1 | 21616904 | C-A | HET | ||
| SBS | Chr2 | 716563 | G-A | HET | ||
| SBS | Chr2 | 8997646 | A-G | HOMO | ||
| SBS | Chr2 | 11334593 | T-C | HOMO | ||
| SBS | Chr2 | 32363762 | C-A | HET | ||
| SBS | Chr3 | 16971335 | T-C | HET | ||
| SBS | Chr3 | 23511412 | C-A | HOMO | ||
| SBS | Chr3 | 28475054 | T-A | HET | ||
| SBS | Chr3 | 34425196 | C-T | HOMO | ||
| SBS | Chr4 | 3601615 | G-A | HET | ||
| SBS | Chr4 | 10574248 | A-G | HET | ||
| SBS | Chr4 | 12165648 | T-G | HET | ||
| SBS | Chr4 | 15082790 | T-G | HOMO | ||
| SBS | Chr4 | 28087754 | A-G | HOMO | ||
| SBS | Chr4 | 33552594 | G-A | HOMO | ||
| SBS | Chr5 | 28139659 | G-A | HOMO | ||
| SBS | Chr6 | 48334 | T-A | HOMO | ||
| SBS | Chr6 | 13623213 | G-A | HET | ||
| SBS | Chr6 | 19570673 | G-T | HOMO | ||
| SBS | Chr6 | 24610982 | C-T | HET | ||
| SBS | Chr7 | 1874446 | G-A | HOMO | ||
| SBS | Chr7 | 3959216 | G-A | HOMO | ||
| SBS | Chr7 | 7237988 | T-C | HET | ||
| SBS | Chr7 | 10046235 | A-G | HET | ||
| SBS | Chr7 | 10529822 | C-T | HOMO | ||
| SBS | Chr7 | 12317872 | A-G | HET | ||
| SBS | Chr7 | 28210999 | T-A | HET | ||
| SBS | Chr8 | 9169281 | T-C | HET | ||
| SBS | Chr8 | 13040857 | G-A | HET | ||
| SBS | Chr8 | 17237446 | T-G | HET | ||
| SBS | Chr8 | 17423501 | A-G | HET | ||
| SBS | Chr8 | 23774705 | G-A | HET | ||
| SBS | Chr8 | 27051045 | G-T | HET | ||
| SBS | Chr9 | 5036173 | G-A | HET | ||
| SBS | Chr10 | 7707566 | G-C | HET | ||
| SBS | Chr10 | 14408146 | C-T | HET | ||
| SBS | Chr10 | 21959007 | G-C | HET | ||
| SBS | Chr11 | 7076595 | A-T | HOMO | ||
| SBS | Chr11 | 21816501 | C-T | HET | ||
| SBS | Chr11 | 27623068 | G-A | HET | ||
| SBS | Chr12 | 10433076 | G-A | HET | ||
| SBS | Chr12 | 13638765 | G-T | HET | ||
| SBS | Chr12 | 14067220 | C-A | HET | ||
| SBS | Chr12 | 14079136 | A-T | HET | ||
| SBS | Chr12 | 21237668 | A-C | HET | ||
| SBS | Chr12 | 24199546 | C-A | HET |
Deletions: 46
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 324205 | 324206 | 2 | |
| Deletion | Chr6 | 706381 | 706393 | 13 | |
| Deletion | Chr12 | 756993 | 756994 | 2 | |
| Deletion | Chr3 | 1070298 | 1070298 | 1 | |
| Deletion | Chr4 | 1634538 | 1634547 | 10 | |
| Deletion | Chr12 | 2210923 | 2210923 | 1 | |
| Deletion | Chr4 | 2625652 | 2625661 | 10 | |
| Deletion | Chr2 | 3664165 | 3664165 | 1 | |
| Deletion | Chr2 | 3892117 | 3892117 | 1 | |
| Deletion | Chr12 | 3955001 | 4007000 | 52000 | 6 |
| Deletion | Chr10 | 4239739 | 4239739 | 1 | |
| Deletion | Chr4 | 4879619 | 4879619 | 1 | |
| Deletion | Chr9 | 5757661 | 5757671 | 11 | |
| Deletion | Chr3 | 5873308 | 5873308 | 1 | |
| Deletion | Chr8 | 7606536 | 7606552 | 17 | |
| Deletion | Chr2 | 9202783 | 9202828 | 46 | |
| Deletion | Chr3 | 10920932 | 10920932 | 1 | |
| Deletion | Chr4 | 11867404 | 11867407 | 4 | |
| Deletion | Chr3 | 12433829 | 12433832 | 4 | OsKitaake03g167400 |
| Deletion | Chr6 | 13608544 | 13608544 | 1 | |
| Deletion | Chr3 | 13652888 | 13652932 | 45 | |
| Deletion | Chr4 | 14129854 | 14129854 | 1 | |
| Deletion | Chr2 | 14893504 | 14893507 | 4 | |
| Deletion | Chr4 | 15127565 | 15127565 | 1 | |
| Deletion | Chr11 | 15987187 | 15987187 | 1 | |
| Deletion | Chr3 | 16549715 | 16549715 | 1 | |
| Deletion | Chr3 | 16586818 | 16586818 | 1 | |
| Deletion | Chr8 | 17264001 | 17333000 | 69000 | 3 |
| Deletion | Chr4 | 18210317 | 18210320 | 4 | |
| Deletion | Chr2 | 18323754 | 18323755 | 2 | |
| Deletion | Chr3 | 18645002 | 18645003 | 2 | |
| Deletion | Chr9 | 21647787 | 21647805 | 19 | |
| Deletion | Chr8 | 21720653 | 21720664 | 12 | |
| Deletion | Chr9 | 22125001 | 22141000 | 16000 | 3 |
| Deletion | Chr12 | 22398353 | 22398357 | 5 | |
| Deletion | Chr2 | 23350453 | 23350453 | 1 | |
| Deletion | Chr2 | 23910087 | 23910087 | 1 | |
| Deletion | Chr2 | 24216212 | 24216214 | 3 | |
| Deletion | Chr1 | 25992461 | 25992476 | 16 | |
| Deletion | Chr4 | 26443190 | 26443199 | 10 | |
| Deletion | Chr4 | 27520844 | 27520860 | 17 | |
| Deletion | Chr3 | 27565733 | 27565733 | 1 | |
| Deletion | Chr8 | 28380587 | 28380588 | 2 | |
| Deletion | Chr2 | 28497857 | 28497892 | 36 | |
| Deletion | Chr5 | 29959330 | 29959338 | 9 | OsKitaake05g287500 |
| Deletion | Chr6 | 30482814 | 30482814 | 1 |
Insertions: 7
Inversions: 9
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 8018994 | 8019286 | |
| Inversion | Chr1 | 11329145 | 11329217 | |
| Inversion | Chr1 | 12683731 | 12683880 | |
| Inversion | Chr8 | 17253204 | 17335564 | |
| Inversion | Chr8 | 22352035 | 22381413 | OsKitaake08g170500 |
| Inversion | Chr8 | 22352223 | 22380579 | OsKitaake08g170500 |
| Inversion | Chr1 | 24277484 | 24530214 | |
| Inversion | Chr1 | 24277498 | 24530218 | |
| Inversion | Chr11 | 25972222 | 25972395 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 14165088 | Chr3 | 20263589 | |
| Translocation | Chr6 | 14165100 | Chr3 | 20255768 |