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| Mutant Information |
|---|
| Mutant Name | FN469-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN469-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 2549402 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 17850711 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 2406902 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9990901 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 5137549 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 10208606 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 11562228 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 34902036 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 841777 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12918281 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8756529 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15347347 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 246655 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1136746 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 20480652 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25171804 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1038030 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 22850908 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24579187 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28707205 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g246300 |
| SBS | Chr9 | 2166911 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 7144805 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 11734395 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 2289087 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 14567216 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14886146 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20853540 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21263819 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25819744 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 9412242 | C-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 747215 | 747217 | 2 | |
| Deletion | Chr12 | 1429525 | 1429526 | 1 | |
| Deletion | Chr4 | 2168206 | 2168207 | 1 | |
| Deletion | Chr10 | 2554310 | 2554312 | 2 | |
| Deletion | Chr7 | 5509777 | 5509778 | 1 | |
| Deletion | Chr2 | 8407198 | 8407199 | 1 | |
| Deletion | Chr1 | 11418018 | 11418019 | 1 | |
| Deletion | Chr2 | 15002812 | 15002813 | 1 | |
| Deletion | Chr10 | 15350469 | 15350474 | 5 | |
| Deletion | Chr4 | 16599001 | 16703000 | 103999 | 12 |
| Deletion | Chr12 | 20354121 | 20354129 | 8 | |
| Deletion | Chr9 | 22209538 | 22209539 | 1 | |
| Deletion | Chr11 | 28517841 | 28517843 | 2 | OsKitaake11g233500 |
| Deletion | Chr2 | 28818115 | 28818124 | 9 | |
| Deletion | Chr3 | 33834704 | 33834705 | 1 | OsKitaake03g364550 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 32016197 | 32016200 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 11691582 | 12239665 | OsKitaake09g080000 |
| Inversion | Chr9 | 11691589 | 12239674 | OsKitaake09g080000 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 19566894 | Chr2 | 963641 | OsKitaake02g013900 |
| Translocation | Chr7 | 19570265 | Chr2 | 963637 | OsKitaake02g013900 |
| Translocation | Chr2 | 37024806 | Chr1 | 6739723 | OsKitaake02g397300 |
| Translocation | Chr2 | 37030006 | Chr1 | 6739586 | OsKitaake02g397400 |