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| Mutant Information |
|---|
| Mutant Name | FN470-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN470-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4083033 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 19027978 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 22078199 | A-C | Homo | INTRON | |
| SBS | Chr4 | 6905768 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21736300 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 36952754 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 11734938 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16980244 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23743374 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g208000 |
| SBS | Chr6 | 7041308 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10333468 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 26448224 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 13997263 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21365422 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 26229232 | T-A | Homo | INTRON | |
| SBS | Chr8 | 1343237 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1343563 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 7638122 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1548793 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7602460 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 7602835 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14002202 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 18842459 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9158898 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 9158899 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25003565 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14587268 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15664638 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 26170280 | G-C | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 103733 | 103736 | 3 | |
| Deletion | Chr7 | 589133 | 589136 | 3 | OsKitaake07g006500 |
| Deletion | Chr8 | 1343707 | 1343708 | 1 | |
| Deletion | Chr6 | 3380225 | 3380229 | 4 | |
| Deletion | Chr9 | 3543083 | 3543091 | 8 | |
| Deletion | Chr8 | 6523661 | 6523665 | 4 | |
| Deletion | Chr7 | 11766800 | 11766801 | 1 | |
| Deletion | Chr12 | 12826006 | 12826008 | 2 | |
| Deletion | Chr2 | 16250916 | 16250918 | 2 | OsKitaake02g167000 |
| Deletion | Chr3 | 16300601 | 16300616 | 15 | |
| Deletion | Chr11 | 17037994 | 17037995 | 1 | |
| Deletion | Chr7 | 18030183 | 18030190 | 7 | |
| Deletion | Chr11 | 19156740 | 19156748 | 8 | |
| Deletion | Chr11 | 24021260 | 24021262 | 2 | |
| Deletion | Chr3 | 24657008 | 24657011 | 3 | |
| Deletion | Chr2 | 24870890 | 24870897 | 7 | |
| Deletion | Chr2 | 30943802 | 30943804 | 2 | OsKitaake02g315800 |
| Deletion | Chr2 | 33255314 | 33255316 | 2 | |
| Deletion | Chr3 | 36381197 | 36381205 | 8 | |
| Deletion | Chr1 | 37858208 | 37858221 | 13 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 821856 | 821859 | 2 | |
| Insertion | Chr5 | 20328127 | 20328130 | 2 | |
| Insertion | Chr11 | 7055517 | 7055522 | 4 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 23184894 | Chr2 | 21369393 |