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| Mutant Information |
|---|
| Mutant Name | FN471-Sredo [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN471-Sredo Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21680500 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g208900 |
| SBS | Chr1 | 21905104 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 28006743 | A-G | Hetero | START_GAINED | |
| SBS | Chr2 | 5818940 | C-A | Homo | INTRON | |
| SBS | Chr2 | 11858579 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 36888292 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 4048349 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21914132 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 21914133 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13831580 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13831581 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15896207 | G-C | Hetero | INTRON | |
| SBS | Chr4 | 26203378 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 8469769 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9092064 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 12905260 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 16677346 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21322343 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26369725 | C-T | Homo | STOP_GAINED | OsKitaake05g233000 |
| SBS | Chr6 | 15269754 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 25870666 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2094979 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 14426433 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 12308226 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3070860 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14459657 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4907091 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 22355888 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26583031 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 15640035 | C-G | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2469535 | 2469620 | 85 | |
| Deletion | Chr8 | 5076763 | 5076764 | 1 | |
| Deletion | Chr12 | 11323851 | 11323866 | 15 | |
| Deletion | Chr1 | 17189332 | 17189497 | 165 | |
| Deletion | Chr3 | 17538124 | 17538125 | 1 | |
| Deletion | Chr3 | 18693563 | 18693567 | 4 | |
| Deletion | Chr4 | 20195995 | 20196004 | 9 | OsKitaake04g107000 |
| Deletion | Chr3 | 22722855 | 22722856 | 1 | |
| Deletion | Chr1 | 28161189 | 28161527 | 338 | |
| Deletion | Chr4 | 29501316 | 29501327 | 11 | OsKitaake04g226200 |
| Deletion | Chr2 | 36606001 | 36614000 | 7999 | 2 |
| Deletion | Chr2 | 36625121 | 36625122 | 1 | OsKitaake02g389800 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 4602598 | 4602600 | 1 | |
| Insertion | Chr3 | 10043096 | 10043100 | 3 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 14129207 | Chr2 | 35516728 | |
| Translocation | Chr7 | 14130957 | Chr2 | 35516712 | |
| Translocation | Chr6 | 29474856 | Chr2 | 36888403 | |
| Translocation | Chr6 | 29474946 | Chr2 | 36888218 |