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Mutant Information

Mutant Name	FN4713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4713-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1592773 T-A HET
SBS Chr1 27104228 C-T HOMO
SBS Chr1 32224804 G-A HOMO
SBS Chr2 9111154 G-A HET
SBS Chr2 9758846 G-A HET
SBS Chr2 24270416 C-T HET
SBS Chr2 30458847 G-T HOMO OsKitaake02g310500
SBS Chr2 32813686 T-A HET
SBS Chr3 1319708 G-C HET
SBS Chr3 5878983 T-C HET
SBS Chr3 8293582 T-C HET OsKitaake03g114500
SBS Chr3 20230462 C-T HET
SBS Chr3 29115004 A-G HET
SBS Chr3 32098632 C-A HET
SBS Chr4 1567037 C-T HET
SBS Chr4 34312342 G-A HET
SBS Chr5 3449704 C-T HOMO
SBS Chr5 12018660 G-A HET
SBS Chr5 18927251 G-A HET
SBS Chr5 23838860 C-T HET
SBS Chr6 2141130 C-T HET
SBS Chr6 2595872 A-T HET
SBS Chr6 21632411 C-T HET
SBS Chr7 5936184 C-A HET
SBS Chr7 6432587 T-A HET
SBS Chr8 9507666 C-T HET
SBS Chr8 28856958 C-T HET
SBS Chr9 7647181 A-T HET
SBS Chr9 7647182 G-T HET
SBS Chr9 9353597 G-T HOMO
SBS Chr10 3147417 G-T HET
SBS Chr10 5915609 G-A HET
SBS Chr10 5915610 G-A HET
SBS Chr10 10625318 G-A HET
SBS Chr11 2661969 C-T HOMO
SBS Chr11 8365665 T-A HOMO
SBS Chr11 10203055 G-A HOMO
SBS Chr11 26886015 T-G HET
SBS Chr12 12427094 T-A HET

Deletions: 46

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 16211 16211 1
Deletion Chr6 51630 51630 1
Deletion Chr10 750325 750325 1
Deletion Chr10 1150517 1150517 1
Deletion Chr8 1453082 1453083 2
Deletion Chr10 2186025 2186026 2
Deletion Chr9 2744768 2744768 1
Deletion Chr7 3248700 3248700 1
Deletion Chr10 3621001 4030000 409000 28
Deletion Chr6 3734284 3734284 1
Deletion Chr10 4032001 4180000 148000 16
Deletion Chr10 4460001 4536000 76000 5
Deletion Chr9 5236243 5236243 1
Deletion Chr10 5338700 5338700 1
Deletion Chr10 5997001 6019000 22000 2
Deletion Chr7 6020269 6020269 1
Deletion Chr2 6208825 6208825 1
Deletion Chr5 7933000 7933010 11
Deletion Chr11 8229644 8229644 1
Deletion Chr11 9355550 9355550 1
Deletion Chr11 9465392 9465392 1 OsKitaake11g099100
Deletion Chr4 10420847 10420847 1
Deletion Chr4 10507868 10507869 2
Deletion Chr11 10920558 10920558 1
Deletion Chr12 11707464 11707464 1
Deletion Chr2 11779674 11779675 2
Deletion Chr1 12654886 12654886 1
Deletion Chr7 13409898 13409898 1
Deletion Chr8 13782245 13782246 2
Deletion Chr8 15561623 15561623 1
Deletion Chr3 16788933 16788934 2
Deletion Chr10 17341980 17341980 1
Deletion Chr11 18416861 18416864 4
Deletion Chr4 18867729 18867729 1
Deletion Chr10 19296673 19296673 1
Deletion Chr2 21651507 21651508 2
Deletion Chr6 22935079 22935079 1
Deletion Chr5 23527231 23527232 2
Deletion Chr7 23637583 23637584 2
Deletion Chr8 27794055 27794055 1
Deletion Chr1 28930375 28930375 1
Deletion Chr8 29117448 29117448 1
Deletion Chr3 29139789 29139802 14
Deletion Chr5 30263361 30263361 1
Deletion Chr2 34936318 34936320 3 OsKitaake02g364400
Deletion Chr4 35988728 35988728 1

Insertions: 47

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3109212 3109214 1
Insertion Chr1 20180309 20180311 1
Insertion Chr1 21508748 21508751 2
Insertion Chr1 22179658 22179660 1
Insertion Chr1 22744940 22744942 1
Insertion Chr1 23227464 23227466 1
Insertion Chr2 8380979 8380981 1
Insertion Chr2 10086360 10086362 1
Insertion Chr2 13249450 13249503 52
Insertion Chr2 20644096 20644098 1
Insertion Chr2 26250212 26250214 1
Insertion Chr3 180827 180829 1
Insertion Chr3 675338 675340 1
Insertion Chr3 697741 697745 3
Insertion Chr3 4575504 4575506 1
Insertion Chr3 22619369 22619371 1
Insertion Chr3 26475610 26475612 1
Insertion Chr3 27850240 27850242 1
Insertion Chr4 34907264 34907266 1
Insertion Chr5 729589 729591 1
Insertion Chr5 9506435 9506437 1
Insertion Chr5 13259410 13259412 1
Insertion Chr5 14296838 14296840 1
Insertion Chr5 27179019 27179021 1
Insertion Chr6 2231639 2231641 1
Insertion Chr6 3948478 3948480 1
Insertion Chr6 20002608 20002610 1
Insertion Chr6 29716481 29716483 1
Insertion Chr7 5899942 5899944 1
Insertion Chr7 14956639 14956641 1
Insertion Chr8 6327596 6327598 1
Insertion Chr8 8341623 8341625 1
Insertion Chr8 19369996 19369998 1
Insertion Chr9 2741670 2741672 1
Insertion Chr9 12554963 12554965 1
Insertion Chr9 19778703 19778705 1
Insertion Chr10 8615791 8615793 1
Insertion Chr10 15675189 15675191 1
Insertion Chr10 18790263 18790265 1
Insertion Chr10 22975408 22975410 1
Insertion Chr11 10088107 10088109 1
Insertion Chr11 12507764 12507777 12
Insertion Chr12 3860780 3860782 1
Insertion Chr12 9326082 9326084 1
Insertion Chr12 21855314 21855316 1
Insertion Chr12 25179333 25179335 1
Insertion Chr4 2702833 2702835 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3620216 Chr2 692805
Translocation Chr10 3620806 Chr4 36000770
Translocation Chr4 25797827 Chr3 3129638
Translocation Chr4 25798868 Chr3 3129627
Translocation Chr4 36000119 Chr2 692836

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1592773	T-A	HET
SBS	Chr1	27104228	C-T	HOMO
SBS	Chr1	32224804	G-A	HOMO
SBS	Chr2	9111154	G-A	HET
SBS	Chr2	9758846	G-A	HET
SBS	Chr2	24270416	C-T	HET
SBS	Chr2	30458847	G-T	HOMO		OsKitaake02g310500
SBS	Chr2	32813686	T-A	HET
SBS	Chr3	1319708	G-C	HET
SBS	Chr3	5878983	T-C	HET
SBS	Chr3	8293582	T-C	HET		OsKitaake03g114500
SBS	Chr3	20230462	C-T	HET
SBS	Chr3	29115004	A-G	HET
SBS	Chr3	32098632	C-A	HET
SBS	Chr4	1567037	C-T	HET
SBS	Chr4	34312342	G-A	HET
SBS	Chr5	3449704	C-T	HOMO
SBS	Chr5	12018660	G-A	HET
SBS	Chr5	18927251	G-A	HET
SBS	Chr5	23838860	C-T	HET
SBS	Chr6	2141130	C-T	HET
SBS	Chr6	2595872	A-T	HET
SBS	Chr6	21632411	C-T	HET
SBS	Chr7	5936184	C-A	HET
SBS	Chr7	6432587	T-A	HET
SBS	Chr8	9507666	C-T	HET
SBS	Chr8	28856958	C-T	HET
SBS	Chr9	7647181	A-T	HET
SBS	Chr9	7647182	G-T	HET
SBS	Chr9	9353597	G-T	HOMO
SBS	Chr10	3147417	G-T	HET
SBS	Chr10	5915609	G-A	HET
SBS	Chr10	5915610	G-A	HET
SBS	Chr10	10625318	G-A	HET
SBS	Chr11	2661969	C-T	HOMO
SBS	Chr11	8365665	T-A	HOMO
SBS	Chr11	10203055	G-A	HOMO
SBS	Chr11	26886015	T-G	HET
SBS	Chr12	12427094	T-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	16211	16211	1
Deletion	Chr6	51630	51630	1
Deletion	Chr10	750325	750325	1
Deletion	Chr10	1150517	1150517	1
Deletion	Chr8	1453082	1453083	2
Deletion	Chr10	2186025	2186026	2
Deletion	Chr9	2744768	2744768	1
Deletion	Chr7	3248700	3248700	1
Deletion	Chr10	3621001	4030000	409000	28
Deletion	Chr6	3734284	3734284	1
Deletion	Chr10	4032001	4180000	148000	16
Deletion	Chr10	4460001	4536000	76000	5
Deletion	Chr9	5236243	5236243	1
Deletion	Chr10	5338700	5338700	1
Deletion	Chr10	5997001	6019000	22000	2
Deletion	Chr7	6020269	6020269	1
Deletion	Chr2	6208825	6208825	1
Deletion	Chr5	7933000	7933010	11
Deletion	Chr11	8229644	8229644	1
Deletion	Chr11	9355550	9355550	1
Deletion	Chr11	9465392	9465392	1	OsKitaake11g099100
Deletion	Chr4	10420847	10420847	1
Deletion	Chr4	10507868	10507869	2
Deletion	Chr11	10920558	10920558	1
Deletion	Chr12	11707464	11707464	1
Deletion	Chr2	11779674	11779675	2
Deletion	Chr1	12654886	12654886	1
Deletion	Chr7	13409898	13409898	1
Deletion	Chr8	13782245	13782246	2
Deletion	Chr8	15561623	15561623	1
Deletion	Chr3	16788933	16788934	2
Deletion	Chr10	17341980	17341980	1
Deletion	Chr11	18416861	18416864	4
Deletion	Chr4	18867729	18867729	1
Deletion	Chr10	19296673	19296673	1
Deletion	Chr2	21651507	21651508	2
Deletion	Chr6	22935079	22935079	1
Deletion	Chr5	23527231	23527232	2
Deletion	Chr7	23637583	23637584	2
Deletion	Chr8	27794055	27794055	1
Deletion	Chr1	28930375	28930375	1
Deletion	Chr8	29117448	29117448	1
Deletion	Chr3	29139789	29139802	14
Deletion	Chr5	30263361	30263361	1
Deletion	Chr2	34936318	34936320	3	OsKitaake02g364400
Deletion	Chr4	35988728	35988728	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3620216	Chr2	692805
Translocation	Chr10	3620806	Chr4	36000770
Translocation	Chr4	25797827	Chr3	3129638
Translocation	Chr4	25798868	Chr3	3129627
Translocation	Chr4	36000119	Chr2	692836

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes