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| Mutant Information |
|---|
| Mutant Name | FN4716-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4716-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32671846 | T-A | HOMO | ||
| SBS | Chr2 | 8306031 | G-A | HOMO | ||
| SBS | Chr2 | 28210240 | T-A | HOMO | ||
| SBS | Chr2 | 32454965 | C-T | HOMO | ||
| SBS | Chr3 | 17306216 | G-C | HOMO | ||
| SBS | Chr5 | 10875414 | G-T | HET | ||
| SBS | Chr6 | 681648 | G-T | HET | OsKitaake06g006700 | |
| SBS | Chr6 | 3362151 | A-G | HOMO | ||
| SBS | Chr6 | 5636092 | C-A | HOMO | ||
| SBS | Chr6 | 14468587 | C-T | HET | ||
| SBS | Chr6 | 14702686 | G-A | HET | ||
| SBS | Chr6 | 25984839 | G-A | HOMO | ||
| SBS | Chr6 | 27112078 | C-G | HOMO | ||
| SBS | Chr8 | 19417724 | C-T | HET | ||
| SBS | Chr8 | 24673795 | T-C | HET | ||
| SBS | Chr9 | 3077184 | C-T | HET | ||
| SBS | Chr9 | 22451404 | C-A | HOMO | ||
| SBS | Chr10 | 604849 | C-G | HOMO | ||
| SBS | Chr10 | 7956204 | T-C | HET | ||
| SBS | Chr10 | 13706707 | G-A | HET | ||
| SBS | Chr12 | 4062543 | G-A | HET | ||
| SBS | Chr12 | 5494322 | G-A | HOMO | ||
| SBS | Chr12 | 10704633 | G-A | HET | ||
| SBS | Chr12 | 19138616 | G-A | HOMO | ||
| SBS | Chr12 | 20484500 | C-T | HET | ||
| SBS | Chr12 | 24529768 | C-T | HET | ||
| SBS | Chr12 | 26871703 | A-T | HET | ||
| SBS | Chr12 | 26944602 | T-C | HET |
Deletions: 28
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 148856 | 148856 | 1 | |
| Deletion | Chr10 | 643001 | 668000 | 25000 | OsKitaake10g004500 |
| Deletion | Chr1 | 1587336 | 1587336 | 1 | |
| Deletion | Chr9 | 2738728 | 2738728 | 1 | |
| Deletion | Chr7 | 3110199 | 3110208 | 10 | |
| Deletion | Chr11 | 3753454 | 3753454 | 1 | |
| Deletion | Chr1 | 4390234 | 4390234 | 1 | |
| Deletion | Chr11 | 6705134 | 6705134 | 1 | |
| Deletion | Chr3 | 7301625 | 7301626 | 2 | OsKitaake03g101800 |
| Deletion | Chr11 | 8197025 | 8197025 | 1 | |
| Deletion | Chr9 | 9611865 | 9611865 | 1 | |
| Deletion | Chr1 | 13582531 | 13582552 | 22 | |
| Deletion | Chr12 | 13675977 | 13675984 | 8 | |
| Deletion | Chr6 | 14771563 | 14771563 | 1 | |
| Deletion | Chr12 | 15528042 | 15528055 | 14 | |
| Deletion | Chr11 | 16759136 | 16759136 | 1 | |
| Deletion | Chr3 | 17540485 | 17540485 | 1 | |
| Deletion | Chr8 | 19034627 | 19034628 | 2 | |
| Deletion | Chr7 | 21112842 | 21112842 | 1 | |
| Deletion | Chr8 | 22981077 | 22981077 | 1 | |
| Deletion | Chr5 | 24315903 | 24315906 | 4 | |
| Deletion | Chr2 | 25319714 | 25319726 | 13 | |
| Deletion | Chr1 | 25568187 | 25568187 | 1 | |
| Deletion | Chr6 | 26547028 | 26547028 | 1 | |
| Deletion | Chr11 | 27879906 | 27879906 | 1 | |
| Deletion | Chr4 | 33256887 | 33256888 | 2 | |
| Deletion | Chr2 | 35004739 | 35004748 | 10 | |
| Deletion | Chr2 | 36627716 | 36627716 | 1 |
Insertions: 7
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 27871979 | 27872140 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 9229705 | Chr4 | 32073013 | |
| Translocation | Chr7 | 9229972 | Chr4 | 32073012 | |
| Translocation | Chr12 | 23982376 | Chr10 | 7792059 | |
| Translocation | Chr12 | 23983043 | Chr4 | 19106540 |