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Mutant Information

Mutant Name	FN472-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN472-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 177156 G-A Hetero INTERGENIC
SBS Chr1 10396428 C-T Hetero INTERGENIC
SBS Chr1 20914544 T-A Hetero INTERGENIC
SBS Chr1 27311230 T-G Hetero INTERGENIC
SBS Chr1 43244803 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g477700
SBS Chr2 16362522 A-G Hetero INTERGENIC
SBS Chr2 29763948 T-A Homo INTERGENIC
SBS Chr3 1815452 G-C Hetero INTRON
SBS Chr3 11324761 T-C Hetero INTERGENIC
SBS Chr4 17971017 C-T Homo INTERGENIC
SBS Chr5 874370 A-G Hetero INTRON
SBS Chr5 22743291 C-A Hetero INTERGENIC
SBS Chr6 4065074 C-T Hetero INTERGENIC
SBS Chr6 14407408 C-T Hetero INTERGENIC
SBS Chr6 26335146 G-T Hetero INTERGENIC
SBS Chr7 11125089 G-A Homo INTERGENIC
SBS Chr7 12696900 G-T Hetero INTERGENIC
SBS Chr9 3255331 A-C Hetero UTR_5_PRIME
SBS Chr10 12676948 T-A Homo INTERGENIC
SBS Chr11 669967 A-T Hetero INTRON
SBS Chr11 18050385 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g141200
SBS Chr12 12350066 T-C Homo INTERGENIC
SBS Chr12 21456172 A-G Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1045610 1045614 4
Deletion Chr3 6865727 6865729 2
Deletion Chr7 7397001 7546000 148999 11
Deletion Chr9 15740356 15740363 7
Deletion Chr10 16101317 16101328 11
Deletion Chr2 32230114 32230119 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 9487228 9487230 1
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 29598229 29960394 OsKitaake01g290000
Inversion Chr1 29598235 29960399 OsKitaake01g290000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	177156	G-A	Hetero	INTERGENIC
SBS	Chr1	10396428	C-T	Hetero	INTERGENIC
SBS	Chr1	20914544	T-A	Hetero	INTERGENIC
SBS	Chr1	27311230	T-G	Hetero	INTERGENIC
SBS	Chr1	43244803	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g477700
SBS	Chr2	16362522	A-G	Hetero	INTERGENIC
SBS	Chr2	29763948	T-A	Homo	INTERGENIC
SBS	Chr3	1815452	G-C	Hetero	INTRON
SBS	Chr3	11324761	T-C	Hetero	INTERGENIC
SBS	Chr4	17971017	C-T	Homo	INTERGENIC
SBS	Chr5	874370	A-G	Hetero	INTRON
SBS	Chr5	22743291	C-A	Hetero	INTERGENIC
SBS	Chr6	4065074	C-T	Hetero	INTERGENIC
SBS	Chr6	14407408	C-T	Hetero	INTERGENIC
SBS	Chr6	26335146	G-T	Hetero	INTERGENIC
SBS	Chr7	11125089	G-A	Homo	INTERGENIC
SBS	Chr7	12696900	G-T	Hetero	INTERGENIC
SBS	Chr9	3255331	A-C	Hetero	UTR_5_PRIME
SBS	Chr10	12676948	T-A	Homo	INTERGENIC
SBS	Chr11	669967	A-T	Hetero	INTRON
SBS	Chr11	18050385	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g141200
SBS	Chr12	12350066	T-C	Homo	INTERGENIC
SBS	Chr12	21456172	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1045610	1045614	4
Deletion	Chr3	6865727	6865729	2
Deletion	Chr7	7397001	7546000	148999	11
Deletion	Chr9	15740356	15740363	7
Deletion	Chr10	16101317	16101328	11
Deletion	Chr2	32230114	32230119	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	29598229	29960394	OsKitaake01g290000
Inversion	Chr1	29598235	29960399	OsKitaake01g290000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes