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| Mutant Information |
|---|
| Mutant Name | FN473-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN473-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 3854262 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29601511 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 22789475 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g221600 |
| SBS | Chr3 | 16546623 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20164581 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25793465 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 30889614 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g324300 |
| SBS | Chr3 | 33644885 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2210629 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 5079476 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 5079480 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14799119 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23329453 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 23951855 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 1069822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2663243 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6342425 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 318041 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 11824279 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 19329604 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 23996489 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4870056 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 5129018 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2766383 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 7764193 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 19712447 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g146000 |
| SBS | Chr11 | 14448929 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14448940 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17198421 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1981510 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9565450 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13086430 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13086619 | G-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 3025412 | 3025414 | 2 | |
| Deletion | Chr4 | 5851001 | 5917000 | 65999 | 5 |
| Deletion | Chr2 | 8952840 | 8952841 | 1 | OsKitaake02g112500 |
| Deletion | Chr7 | 10641456 | 10641457 | 1 | |
| Deletion | Chr7 | 11095530 | 11095535 | 5 | |
| Deletion | Chr2 | 13817486 | 13817651 | 165 | |
| Deletion | Chr3 | 14080544 | 14080555 | 11 | |
| Deletion | Chr11 | 18084128 | 18084131 | 3 | |
| Deletion | Chr5 | 19251745 | 19251747 | 2 | |
| Deletion | Chr9 | 20040518 | 20040520 | 2 | |
| Deletion | Chr6 | 20922916 | 20922917 | 1 | |
| Deletion | Chr2 | 22320112 | 22320114 | 2 | |
| Deletion | Chr3 | 24098748 | 24098749 | 1 | |
| Deletion | Chr3 | 26640921 | 26640985 | 64 | |
| Deletion | Chr2 | 29838891 | 29838893 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 15440630 | 15440633 | 2 | |
| Insertion | Chr10 | 16315795 | 16315798 | 2 |