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Mutant Information

Mutant Name	FN474-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN474-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1646233 C-A Hetero INTERGENIC
SBS Chr1 10498854 A-C Hetero INTERGENIC
SBS Chr1 21448178 C-T Hetero INTERGENIC
SBS Chr1 35302231 C-T Homo INTERGENIC
SBS Chr1 43456000 T-A Hetero INTERGENIC
SBS Chr2 3975712 G-A Hetero INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 12296698 C-T Hetero INTERGENIC
SBS Chr2 20279773 A-G Hetero UTR_3_PRIME
SBS Chr2 29184237 A-G Homo SYNONYMOUS_CODING
SBS Chr3 5092592 T-C Homo INTERGENIC
SBS Chr3 15748057 G-A Hetero INTERGENIC
SBS Chr3 16115156 G-T Hetero INTRON
SBS Chr5 13203040 C-A Hetero INTERGENIC
SBS Chr5 15373806 G-T Hetero INTERGENIC
SBS Chr5 19705199 T-C Homo INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr6 5294562 C-A Hetero INTERGENIC
SBS Chr6 17711182 A-G Hetero INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 8181259 G-A Hetero INTRON
SBS Chr7 10586380 C-T Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr9 45277 C-A Hetero INTERGENIC
SBS Chr10 1036762 C-A Hetero INTERGENIC
SBS Chr10 9802951 A-G Hetero INTERGENIC
SBS Chr10 15856709 C-T Homo INTERGENIC
SBS Chr11 4365085 T-G Homo INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr12 9367190 C-T Hetero INTERGENIC
SBS Chr12 9412021 G-T Hetero INTERGENIC
SBS Chr12 12991020 G-A Hetero INTERGENIC
SBS Chr12 18480098 T-A Hetero INTERGENIC
SBS Chr12 18480099 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1347710 1347712 2
Deletion Chr4 4567349 4567363 14
Deletion Chr8 6269242 6269423 181
Deletion Chr5 6544580 6544583 3
Deletion Chr1 7644963 7644965 2
Deletion Chr1 9403648 9403649 1
Deletion Chr9 12290197 12290199 2
Deletion Chr7 17030083 17030085 2
Deletion Chr11 17375085 17375088 3
Deletion Chr11 19896250 19896252 2
Deletion Chr2 29328448 29328452 4
Deletion Chr1 35168166 35168174 8

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28771809 28771812 2
Insertion Chr5 21825823 21825826 2
Insertion Chr5 22200846 22200849 2
Insertion Chr9 20264762 20264765 2
Insertion Chr2 13854529 13854531 1
Insertion Chr4 15771735 15771737 1
Insertion Chr8 9073214 9073218 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10392688 10650193
Inversion Chr9 10393315 10398779

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10392709 Chr2 1170202 OsKitaake02g017400
Translocation Chr9 10393310 Chr2 1170197 OsKitaake02g017400
Translocation Chr10 16252112 Chr2 5078179

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1646233	C-A	Hetero	INTERGENIC
SBS	Chr1	10498854	A-C	Hetero	INTERGENIC
SBS	Chr1	21448178	C-T	Hetero	INTERGENIC
SBS	Chr1	35302231	C-T	Homo	INTERGENIC
SBS	Chr1	43456000	T-A	Hetero	INTERGENIC
SBS	Chr2	3975712	G-A	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	12296698	C-T	Hetero	INTERGENIC
SBS	Chr2	20279773	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	29184237	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr3	5092592	T-C	Homo	INTERGENIC
SBS	Chr3	15748057	G-A	Hetero	INTERGENIC
SBS	Chr3	16115156	G-T	Hetero	INTRON
SBS	Chr5	13203040	C-A	Hetero	INTERGENIC
SBS	Chr5	15373806	G-T	Hetero	INTERGENIC
SBS	Chr5	19705199	T-C	Homo	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr6	5294562	C-A	Hetero	INTERGENIC
SBS	Chr6	17711182	A-G	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	8181259	G-A	Hetero	INTRON
SBS	Chr7	10586380	C-T	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr9	45277	C-A	Hetero	INTERGENIC
SBS	Chr10	1036762	C-A	Hetero	INTERGENIC
SBS	Chr10	9802951	A-G	Hetero	INTERGENIC
SBS	Chr10	15856709	C-T	Homo	INTERGENIC
SBS	Chr11	4365085	T-G	Homo	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr12	9367190	C-T	Hetero	INTERGENIC
SBS	Chr12	9412021	G-T	Hetero	INTERGENIC
SBS	Chr12	12991020	G-A	Hetero	INTERGENIC
SBS	Chr12	18480098	T-A	Hetero	INTERGENIC
SBS	Chr12	18480099	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1347710	1347712	2
Deletion	Chr4	4567349	4567363	14
Deletion	Chr8	6269242	6269423	181
Deletion	Chr5	6544580	6544583	3
Deletion	Chr1	7644963	7644965	2
Deletion	Chr1	9403648	9403649	1
Deletion	Chr9	12290197	12290199	2
Deletion	Chr7	17030083	17030085	2
Deletion	Chr11	17375085	17375088	3
Deletion	Chr11	19896250	19896252	2
Deletion	Chr2	29328448	29328452	4
Deletion	Chr1	35168166	35168174	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10392688	10650193
Inversion	Chr9	10393315	10398779

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes