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| Mutant Information |
|---|
| Mutant Name | FN4742-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4742-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17147351 | A-C | HET | ||
| SBS | Chr1 | 40000536 | T-C | HET | ||
| SBS | Chr3 | 540837 | A-T | HET | ||
| SBS | Chr3 | 11402449 | C-T | HET | ||
| SBS | Chr3 | 12294662 | A-T | HET | ||
| SBS | Chr4 | 14363704 | G-T | HOMO | ||
| SBS | Chr4 | 19394744 | T-A | HOMO | ||
| SBS | Chr4 | 29855528 | T-C | HET | ||
| SBS | Chr5 | 10372387 | A-G | HOMO | ||
| SBS | Chr5 | 26164793 | G-T | HOMO | ||
| SBS | Chr6 | 5883068 | A-G | HET | ||
| SBS | Chr6 | 11388109 | T-C | HET | ||
| SBS | Chr8 | 7480591 | C-T | HOMO | ||
| SBS | Chr9 | 17977116 | G-A | HET | ||
| SBS | Chr10 | 17335865 | C-G | HET | ||
| SBS | Chr10 | 22123523 | T-C | HET | OsKitaake10g179600 | |
| SBS | Chr11 | 6816893 | C-T | HET | ||
| SBS | Chr11 | 12730034 | T-A | HOMO | ||
| SBS | Chr11 | 12730035 | C-A | HOMO | ||
| SBS | Chr11 | 12730036 | G-T | HOMO | ||
| SBS | Chr11 | 12730047 | G-A | HOMO | ||
| SBS | Chr11 | 17658492 | T-A | HET | ||
| SBS | Chr12 | 5956038 | T-C | HOMO | ||
| SBS | Chr12 | 6909710 | G-A | HET | ||
| SBS | Chr12 | 12193183 | C-T | HET |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 325993 | 325993 | 1 | |
| Deletion | Chr4 | 501524 | 501526 | 3 | |
| Deletion | Chr10 | 1699327 | 1699328 | 2 | |
| Deletion | Chr6 | 3542387 | 3542387 | 1 | |
| Deletion | Chr2 | 4063495 | 4063495 | 1 | |
| Deletion | Chr6 | 5255435 | 5255435 | 1 | |
| Deletion | Chr7 | 7793070 | 7793075 | 6 | |
| Deletion | Chr6 | 10804850 | 10804850 | 1 | |
| Deletion | Chr9 | 12894195 | 12894211 | 17 | |
| Deletion | Chr6 | 15804168 | 15804168 | 1 | |
| Deletion | Chr3 | 16802393 | 16802393 | 1 | |
| Deletion | Chr7 | 18607982 | 18607983 | 2 | |
| Deletion | Chr2 | 18875001 | 18884000 | 9000 | OsKitaake02g184900 |
| Deletion | Chr9 | 21087000 | 21087000 | 1 | |
| Deletion | Chr10 | 21476954 | 21476954 | 1 | |
| Deletion | Chr10 | 21596015 | 21596015 | 1 | OsKitaake10g172500 |
| Deletion | Chr10 | 21883190 | 21883190 | 1 | |
| Deletion | Chr5 | 29461455 | 29461456 | 2 | |
| Deletion | Chr1 | 32961337 | 32961341 | 5 | |
| Deletion | Chr1 | 33124075 | 33124075 | 1 |
Insertions: 12
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 8600547 | 8600631 | |
| Inversion | Chr11 | 9521537 | 9545000 | |
| Inversion | Chr11 | 9521538 | 9544990 | |
| Inversion | Chr4 | 18698061 | 18735221 | OsKitaake04g093500 |
| Inversion | Chr3 | 30920018 | 31599250 | OsKitaake03g332901 |
| Inversion | Chr3 | 30920028 | 31599258 | OsKitaake03g332901 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 19482140 | Chr4 | 2881137 | |
| Translocation | Chr7 | 19482143 | Chr4 | 2881012 | |
| Translocation | Chr9 | 22508483 | Chr4 | 18698070 | OsKitaake04g093500 |
| Translocation | Chr9 | 22508493 | Chr4 | 18109513 |