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| Mutant Information |
|---|
| Mutant Name | FN4745-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4745-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3861513 | C-T | HOMO | ||
| SBS | Chr1 | 12355034 | T-A | HOMO | ||
| SBS | Chr2 | 9377283 | G-C | HET | ||
| SBS | Chr2 | 26068944 | A-C | HET | ||
| SBS | Chr2 | 26068947 | G-A | HET | ||
| SBS | Chr3 | 2348107 | A-G | HOMO | ||
| SBS | Chr3 | 23791540 | G-A | HOMO | ||
| SBS | Chr3 | 25865159 | G-A | HOMO | ||
| SBS | Chr3 | 29138032 | G-A | HET | ||
| SBS | Chr3 | 29923685 | T-C | HET | ||
| SBS | Chr4 | 4442231 | G-A | HET | ||
| SBS | Chr4 | 8061304 | T-A | HET | ||
| SBS | Chr4 | 10133780 | G-A | HET | ||
| SBS | Chr4 | 10443633 | C-A | HOMO | ||
| SBS | Chr4 | 10443635 | G-A | HOMO | ||
| SBS | Chr4 | 27300563 | G-A | HET | ||
| SBS | Chr5 | 4793313 | T-A | HET | ||
| SBS | Chr5 | 7094787 | C-T | HET | ||
| SBS | Chr5 | 9469642 | C-G | HET | ||
| SBS | Chr5 | 13292859 | G-A | HET | OsKitaake05g102600 | |
| SBS | Chr5 | 13788520 | T-A | HET | ||
| SBS | Chr6 | 6425502 | C-T | HOMO | ||
| SBS | Chr7 | 5610409 | G-A | HOMO | ||
| SBS | Chr7 | 14769481 | T-G | HET | ||
| SBS | Chr8 | 12570123 | C-T | HOMO | ||
| SBS | Chr9 | 9486658 | G-A | HET | ||
| SBS | Chr10 | 8408463 | A-G | HOMO | ||
| SBS | Chr10 | 23225319 | G-A | HOMO | ||
| SBS | Chr11 | 20170841 | C-T | HOMO | ||
| SBS | Chr11 | 26317617 | C-T | HET | ||
| SBS | Chr11 | 27910495 | C-A | HET | ||
| SBS | Chr11 | 28790816 | G-A | HOMO | ||
| SBS | Chr12 | 3970642 | A-T | HOMO | ||
| SBS | Chr12 | 9762470 | C-A | HOMO | ||
| SBS | Chr12 | 10152571 | G-A | HET |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1824950 | 1824950 | 1 | |
| Deletion | Chr9 | 2859006 | 2859010 | 5 | |
| Deletion | Chr7 | 3269783 | 3269786 | 4 | |
| Deletion | Chr11 | 4579163 | 4579170 | 8 | |
| Deletion | Chr1 | 5905446 | 5905447 | 2 | |
| Deletion | Chr1 | 10753809 | 10753809 | 1 | |
| Deletion | Chr1 | 13010026 | 13010042 | 17 | |
| Deletion | Chr6 | 15734956 | 15734956 | 1 | |
| Deletion | Chr9 | 15846713 | 15846718 | 6 | |
| Deletion | Chr11 | 17353581 | 17353594 | 14 | |
| Deletion | Chr11 | 19489024 | 19489025 | 2 | |
| Deletion | Chr6 | 21466801 | 21466801 | 1 | |
| Deletion | Chr11 | 27869775 | 27869780 | 6 | |
| Deletion | Chr8 | 28996531 | 28996531 | 1 | OsKitaake08g250900 |
| Deletion | Chr4 | 29712228 | 29712228 | 1 | |
| Deletion | Chr1 | 34936840 | 34936846 | 7 | |
| Deletion | Chr3 | 36294953 | 36294953 | 1 | |
| Deletion | Chr1 | 37082979 | 37082980 | 2 | OsKitaake01g395300 |
Insertions: 9
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 2370011 | 2370361 | |
| Inversion | Chr4 | 7998581 | 8227334 | |
| Inversion | Chr4 | 7998591 | 8227335 | |
| Inversion | Chr3 | 31907059 | 31907273 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 9546598 | Chr6 | 1491138 | |
| Translocation | Chr12 | 9547368 | Chr6 | 1491138 |