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Mutant Information

Mutant Name	FN475-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN475-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5890970 G-A Hetero INTERGENIC
SBS Chr1 9359773 G-A Hetero INTERGENIC
SBS Chr1 26514766 G-A Homo INTERGENIC
SBS Chr1 41123341 G-T Hetero INTERGENIC
SBS Chr3 3393055 C-T Hetero INTERGENIC
SBS Chr3 28381778 C-T Hetero START_GAINED
SBS Chr4 4042014 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g019700
SBS Chr4 4252003 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 10973256 G-A Hetero INTERGENIC
SBS Chr4 20445589 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g110000
SBS Chr4 29205473 A-T Homo INTRON
SBS Chr5 10190402 C-T Hetero INTERGENIC
SBS Chr5 21490635 A-C Homo INTRON
SBS Chr6 6688047 G-A Hetero INTERGENIC
SBS Chr6 21717830 G-A Homo INTERGENIC
SBS Chr7 15659822 C-T Hetero INTERGENIC
SBS Chr8 2090639 T-C Hetero INTRON
SBS Chr8 16183620 A-G Homo INTERGENIC
SBS Chr9 3569163 G-A Homo INTERGENIC
SBS Chr9 16773955 T-C Hetero INTERGENIC
SBS Chr10 2182936 A-G Homo INTERGENIC
SBS Chr10 3131362 G-A Homo INTERGENIC
SBS Chr10 3848867 T-C Homo INTERGENIC
SBS Chr10 14033226 C-A Homo INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2490687 2490690 3
Deletion Chr10 3822392 3822393 1
Deletion Chr6 8155683 8155687 4
Deletion Chr12 8496787 8496801 14
Deletion Chr8 14125936 14125937 1
Deletion Chr12 15585001 15770000 184999 6
Deletion Chr10 16378193 16378246 53
Deletion Chr3 17358936 17359015 79
Deletion Chr10 20246017 20246019 2
Deletion Chr9 20331361 20331362 1
Deletion Chr10 20984312 20984314 2
Deletion Chr2 27067001 27081000 13999 OsKitaake02g270300
Deletion Chr6 29349687 29349689 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25958262 25958265 2
Insertion Chr3 4412036 4412040 3
Insertion Chr8 21883527 21883530 2
Insertion Chr12 8415327 8415330 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 10948503 10960474
Inversion Chr3 10948524 10960524
Inversion Chr8 16109856 16208994
Inversion Chr8 16112534 16209005
Inversion Chr8 16246018 16249988
Inversion Chr8 16246135 16619062

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5890970	G-A	Hetero	INTERGENIC
SBS	Chr1	9359773	G-A	Hetero	INTERGENIC
SBS	Chr1	26514766	G-A	Homo	INTERGENIC
SBS	Chr1	41123341	G-T	Hetero	INTERGENIC
SBS	Chr3	3393055	C-T	Hetero	INTERGENIC
SBS	Chr3	28381778	C-T	Hetero	START_GAINED
SBS	Chr4	4042014	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g019700
SBS	Chr4	4252003	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	10973256	G-A	Hetero	INTERGENIC
SBS	Chr4	20445589	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g110000
SBS	Chr4	29205473	A-T	Homo	INTRON
SBS	Chr5	10190402	C-T	Hetero	INTERGENIC
SBS	Chr5	21490635	A-C	Homo	INTRON
SBS	Chr6	6688047	G-A	Hetero	INTERGENIC
SBS	Chr6	21717830	G-A	Homo	INTERGENIC
SBS	Chr7	15659822	C-T	Hetero	INTERGENIC
SBS	Chr8	2090639	T-C	Hetero	INTRON
SBS	Chr8	16183620	A-G	Homo	INTERGENIC
SBS	Chr9	3569163	G-A	Homo	INTERGENIC
SBS	Chr9	16773955	T-C	Hetero	INTERGENIC
SBS	Chr10	2182936	A-G	Homo	INTERGENIC
SBS	Chr10	3131362	G-A	Homo	INTERGENIC
SBS	Chr10	3848867	T-C	Homo	INTERGENIC
SBS	Chr10	14033226	C-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2490687	2490690	3
Deletion	Chr10	3822392	3822393	1
Deletion	Chr6	8155683	8155687	4
Deletion	Chr12	8496787	8496801	14
Deletion	Chr8	14125936	14125937	1
Deletion	Chr12	15585001	15770000	184999	6
Deletion	Chr10	16378193	16378246	53
Deletion	Chr3	17358936	17359015	79
Deletion	Chr10	20246017	20246019	2
Deletion	Chr9	20331361	20331362	1
Deletion	Chr10	20984312	20984314	2
Deletion	Chr2	27067001	27081000	13999	OsKitaake02g270300
Deletion	Chr6	29349687	29349689	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10948503	10960474
Inversion	Chr3	10948524	10960524
Inversion	Chr8	16109856	16208994
Inversion	Chr8	16112534	16209005
Inversion	Chr8	16246018	16249988
Inversion	Chr8	16246135	16619062

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes