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| Mutant Information |
|---|
| Mutant Name | FN4752-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4752-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 53
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3324672 | C-A | HET | ||
| SBS | Chr1 | 11636457 | C-T | HET | ||
| SBS | Chr1 | 14797844 | G-T | HET | ||
| SBS | Chr1 | 43548765 | G-C | HET | ||
| SBS | Chr2 | 3512895 | A-G | HET | ||
| SBS | Chr2 | 8330785 | C-A | HET | ||
| SBS | Chr2 | 36329728 | C-A | HET | ||
| SBS | Chr3 | 1423146 | C-A | HET | ||
| SBS | Chr3 | 9713886 | C-T | HET | ||
| SBS | Chr3 | 26457474 | A-T | HET | ||
| SBS | Chr3 | 26484847 | C-T | HOMO | ||
| SBS | Chr3 | 36748022 | C-G | HET | ||
| SBS | Chr3 | 36748024 | A-T | HET | OsKitaake03g409500 | |
| SBS | Chr5 | 409840 | T-G | HET | ||
| SBS | Chr5 | 6711982 | T-A | HET | ||
| SBS | Chr5 | 8351455 | T-A | HET | ||
| SBS | Chr5 | 15941697 | G-A | HET | ||
| SBS | Chr5 | 16635276 | A-T | HET | ||
| SBS | Chr5 | 22849012 | A-C | HET | ||
| SBS | Chr5 | 23479298 | G-T | HET | ||
| SBS | Chr5 | 24056219 | C-T | HET | ||
| SBS | Chr5 | 24204642 | C-A | HET | ||
| SBS | Chr6 | 3926599 | T-A | HET | ||
| SBS | Chr6 | 3926600 | G-A | HET | ||
| SBS | Chr6 | 4028174 | A-T | HET | ||
| SBS | Chr6 | 12821354 | C-A | HOMO | ||
| SBS | Chr6 | 28072824 | G-A | HOMO | ||
| SBS | Chr6 | 30585110 | T-A | HOMO | ||
| SBS | Chr7 | 4331392 | G-A | HET | ||
| SBS | Chr7 | 4838301 | T-C | HET | ||
| SBS | Chr7 | 7819273 | A-T | HET | ||
| SBS | Chr8 | 2316900 | C-T | HOMO | ||
| SBS | Chr8 | 15519843 | G-A | HET | ||
| SBS | Chr8 | 20017946 | G-C | HOMO | ||
| SBS | Chr8 | 20795813 | A-G | HOMO | ||
| SBS | Chr8 | 24179828 | C-G | HET | ||
| SBS | Chr8 | 26904575 | C-T | HOMO | ||
| SBS | Chr9 | 8578163 | G-T | HET | ||
| SBS | Chr9 | 9418817 | G-T | HET | ||
| SBS | Chr9 | 9532458 | G-A | HET | ||
| SBS | Chr9 | 13703083 | G-A | HET | ||
| SBS | Chr11 | 11411081 | C-T | HET | ||
| SBS | Chr11 | 25568059 | G-A | HOMO | ||
| SBS | Chr11 | 26052442 | C-A | HET | ||
| SBS | Chr12 | 91917 | C-T | HET | ||
| SBS | Chr12 | 2083859 | G-A | HET | ||
| SBS | Chr12 | 6175528 | G-A | HET | ||
| SBS | Chr12 | 6175529 | G-A | HET | ||
| SBS | Chr12 | 6175530 | C-T | HET | ||
| SBS | Chr12 | 8132147 | C-G | HET | ||
| SBS | Chr12 | 9440686 | C-A | HET | ||
| SBS | Chr12 | 13987536 | G-T | HOMO | ||
| SBS | Chr12 | 25343363 | T-C | HET |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 905550 | 905550 | 1 | |
| Deletion | Chr9 | 928410 | 928414 | 5 | |
| Deletion | Chr7 | 7839153 | 7839153 | 1 | |
| Deletion | Chr1 | 8811480 | 8811480 | 1 | |
| Deletion | Chr10 | 10026814 | 10026814 | 1 | |
| Deletion | Chr3 | 10199027 | 10199027 | 1 | |
| Deletion | Chr3 | 11780934 | 11780942 | 9 | |
| Deletion | Chr9 | 15974212 | 15974213 | 2 | |
| Deletion | Chr8 | 16020001 | 16027000 | 7000 | OsKitaake08g123700 |
| Deletion | Chr4 | 16633416 | 16633418 | 3 | |
| Deletion | Chr10 | 18307076 | 18307076 | 1 | |
| Deletion | Chr6 | 20400544 | 20400544 | 1 | |
| Deletion | Chr10 | 21642586 | 21642592 | 7 | |
| Deletion | Chr4 | 22586084 | 22586089 | 6 | |
| Deletion | Chr6 | 27804514 | 27804514 | 1 | |
| Deletion | Chr5 | 29046171 | 29046171 | 1 |
Insertions: 7
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 23321427 | 23321511 | OsKitaake07g203200 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 14589988 | Chr2 | 26685022 |