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Mutant Information

Mutant Name	FN476-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN476-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20526959 A-G Hetero INTERGENIC
SBS Chr1 23459176 C-T Hetero INTRON
SBS Chr1 27113945 G-T Hetero INTERGENIC
SBS Chr1 27301264 C-A Hetero INTERGENIC
SBS Chr1 44016534 A-T Hetero INTRON
SBS Chr2 74839 A-G Hetero INTERGENIC
SBS Chr2 2517702 A-T Hetero INTERGENIC
SBS Chr2 5795270 T-A Hetero INTERGENIC
SBS Chr2 11871970 T-A Hetero INTERGENIC
SBS Chr2 14766657 C-A Hetero INTERGENIC
SBS Chr2 14766658 C-T Hetero INTERGENIC
SBS Chr2 30073865 G-C Hetero INTERGENIC
SBS Chr2 33241945 G-A Hetero INTERGENIC
SBS Chr3 3383843 G-A Hetero INTERGENIC
SBS Chr3 20542151 T-G Hetero INTERGENIC
SBS Chr3 24346850 C-T Hetero INTERGENIC
SBS Chr3 25741890 T-C Hetero SPLICE_SITE_ACCEPTOR OsKitaake03g271400
SBS Chr4 8102625 T-A Hetero INTERGENIC
SBS Chr4 20655961 T-C Hetero INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr6 7944898 T-A Hetero INTERGENIC
SBS Chr6 27626430 C-T Hetero INTERGENIC
SBS Chr7 8904981 T-A Hetero INTRON
SBS Chr7 13890643 C-T Hetero INTERGENIC
SBS Chr8 6190754 C-T Hetero INTRON
SBS Chr9 1771118 A-T Hetero SYNONYMOUS_CODING
SBS Chr9 14677834 T-C Hetero INTRON
SBS Chr9 18346703 C-T Hetero INTERGENIC
SBS Chr9 18346705 G-T Hetero INTERGENIC
SBS Chr11 5181632 G-A Hetero INTERGENIC
SBS Chr11 10150413 G-T Hetero INTERGENIC
SBS Chr11 18419405 G-C Hetero INTERGENIC
SBS Chr12 1148259 C-T Hetero INTERGENIC
SBS Chr12 1433426 A-G Hetero INTRON
SBS Chr12 3449001 A-T Hetero INTRON
SBS Chr12 14804694 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 21869304 T-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6202822 6202824 2
Deletion Chr1 7282505 7282506 1
Deletion Chr12 9072237 9072239 2
Deletion Chr4 11077905 11077907 2
Deletion Chr6 11091223 11091229 6
Deletion Chr10 18600061 18600066 5
Deletion Chr4 23173756 23173757 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22163279 22163282 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 3209466 3344309 2
Inversion Chr6 3209517 3344312 2
Inversion Chr1 15497848 15499423
Inversion Chr1 15497850 15499426
Inversion Chr2 20996401 21134741
Inversion Chr2 36057326 36164389 OsKitaake02g382200

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 489173 Chr3 19167618
Translocation Chr5 489202 Chr3 19167624
Translocation Chr5 6634662 Chr1 17908195
Translocation Chr5 26739011 Chr2 36057331
Translocation Chr5 26742232 Chr2 36164392 2
Translocation Chr5 29537287 Chr2 21135377 OsKitaake05g280900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20526959	A-G	Hetero	INTERGENIC
SBS	Chr1	23459176	C-T	Hetero	INTRON
SBS	Chr1	27113945	G-T	Hetero	INTERGENIC
SBS	Chr1	27301264	C-A	Hetero	INTERGENIC
SBS	Chr1	44016534	A-T	Hetero	INTRON
SBS	Chr2	74839	A-G	Hetero	INTERGENIC
SBS	Chr2	2517702	A-T	Hetero	INTERGENIC
SBS	Chr2	5795270	T-A	Hetero	INTERGENIC
SBS	Chr2	11871970	T-A	Hetero	INTERGENIC
SBS	Chr2	14766657	C-A	Hetero	INTERGENIC
SBS	Chr2	14766658	C-T	Hetero	INTERGENIC
SBS	Chr2	30073865	G-C	Hetero	INTERGENIC
SBS	Chr2	33241945	G-A	Hetero	INTERGENIC
SBS	Chr3	3383843	G-A	Hetero	INTERGENIC
SBS	Chr3	20542151	T-G	Hetero	INTERGENIC
SBS	Chr3	24346850	C-T	Hetero	INTERGENIC
SBS	Chr3	25741890	T-C	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake03g271400
SBS	Chr4	8102625	T-A	Hetero	INTERGENIC
SBS	Chr4	20655961	T-C	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr6	7944898	T-A	Hetero	INTERGENIC
SBS	Chr6	27626430	C-T	Hetero	INTERGENIC
SBS	Chr7	8904981	T-A	Hetero	INTRON
SBS	Chr7	13890643	C-T	Hetero	INTERGENIC
SBS	Chr8	6190754	C-T	Hetero	INTRON
SBS	Chr9	1771118	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	14677834	T-C	Hetero	INTRON
SBS	Chr9	18346703	C-T	Hetero	INTERGENIC
SBS	Chr9	18346705	G-T	Hetero	INTERGENIC
SBS	Chr11	5181632	G-A	Hetero	INTERGENIC
SBS	Chr11	10150413	G-T	Hetero	INTERGENIC
SBS	Chr11	18419405	G-C	Hetero	INTERGENIC
SBS	Chr12	1148259	C-T	Hetero	INTERGENIC
SBS	Chr12	1433426	A-G	Hetero	INTRON
SBS	Chr12	3449001	A-T	Hetero	INTRON
SBS	Chr12	14804694	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	21869304	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6202822	6202824	2
Deletion	Chr1	7282505	7282506	1
Deletion	Chr12	9072237	9072239	2
Deletion	Chr4	11077905	11077907	2
Deletion	Chr6	11091223	11091229	6
Deletion	Chr10	18600061	18600066	5
Deletion	Chr4	23173756	23173757	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3209466	3344309	2
Inversion	Chr6	3209517	3344312	2
Inversion	Chr1	15497848	15499423
Inversion	Chr1	15497850	15499426
Inversion	Chr2	20996401	21134741
Inversion	Chr2	36057326	36164389	OsKitaake02g382200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes