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Mutant Information

Mutant Name	FN4767-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4767-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20675625 C-T HOMO
SBS Chr1 22809127 A-T HET
SBS Chr1 24652234 A-T HET
SBS Chr1 38631353 T-A HET
SBS Chr1 40441412 G-A HET
SBS Chr2 905011 G-A HOMO
SBS Chr2 16146966 G-A HET
SBS Chr2 18113150 G-A HET OsKitaake02g180200
SBS Chr3 9818600 T-A HET
SBS Chr3 21744158 C-A HET OsKitaake03g238800
SBS Chr3 33574432 A-T HET
SBS Chr3 37316268 A-G HET
SBS Chr4 19220411 C-A HET
SBS Chr5 10736506 C-T HET
SBS Chr5 14719250 T-C HET
SBS Chr5 22012902 A-T HET
SBS Chr5 23943794 C-T HOMO
SBS Chr6 18716028 G-C HET
SBS Chr7 4398475 T-A HOMO
SBS Chr8 15211128 A-G HET
SBS Chr9 1333416 T-C HET
SBS Chr9 4805287 G-T HET
SBS Chr9 18370971 G-A HET
SBS Chr9 18447020 A-G HET
SBS Chr10 1097674 T-C HOMO
SBS Chr10 10647710 C-T HET
SBS Chr10 21210078 C-T HET
SBS Chr11 16912977 T-A HET
SBS Chr11 24688007 A-T HOMO
SBS Chr12 13843504 G-C HOMO

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 335332 335334 3
Deletion Chr10 443998 444007 10
Deletion Chr11 877343 877344 2
Deletion Chr4 1302961 1302962 2
Deletion Chr1 4593854 4593859 6 OsKitaake01g061600
Deletion Chr4 5383357 5383359 3
Deletion Chr10 7217695 7217705 11 OsKitaake10g047500
Deletion Chr10 7940996 7940997 2
Deletion Chr4 8158366 8158368 3
Deletion Chr8 11699932 11699941 10
Deletion Chr2 12729447 12729450 4 OsKitaake02g142200
Deletion Chr7 12869729 12869740 12
Deletion Chr2 13294496 13294497 2
Deletion Chr12 16227688 16227690 3
Deletion Chr5 17343870 17343870 1
Deletion Chr3 18179270 18179270 1
Deletion Chr4 18372258 18372258 1
Deletion Chr8 20349707 20349710 4
Deletion Chr9 21040738 21040763 26 OsKitaake09g180800
Deletion Chr9 22193184 22193185 2
Deletion Chr5 22702164 22702164 1
Deletion Chr1 24192480 24192486 7
Deletion Chr5 27872861 27872865 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36424500 36424503 2
Insertion Chr6 1064346 1064353 6
Insertion Chr11 24550306 24550309 2
Insertion Chr1 1523406 1523408 1
Insertion Chr1 40325315 40325318 2
Insertion Chr8 22435694 22435696 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 17346731 17972706
Inversion Chr10 20521546 20767074
Inversion Chr10 20521558 20767080
Inversion Chr7 22252319 22252511

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4130558 Chr2 12319680
Translocation Chr10 17346709 Chr8 15210718
Translocation Chr10 17972687 Chr8 15253613 OsKitaake08g119000
Translocation Chr12 25695458 Chr10 4144903

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20675625	C-T	HOMO
SBS	Chr1	22809127	A-T	HET
SBS	Chr1	24652234	A-T	HET
SBS	Chr1	38631353	T-A	HET
SBS	Chr1	40441412	G-A	HET
SBS	Chr2	905011	G-A	HOMO
SBS	Chr2	16146966	G-A	HET
SBS	Chr2	18113150	G-A	HET		OsKitaake02g180200
SBS	Chr3	9818600	T-A	HET
SBS	Chr3	21744158	C-A	HET		OsKitaake03g238800
SBS	Chr3	33574432	A-T	HET
SBS	Chr3	37316268	A-G	HET
SBS	Chr4	19220411	C-A	HET
SBS	Chr5	10736506	C-T	HET
SBS	Chr5	14719250	T-C	HET
SBS	Chr5	22012902	A-T	HET
SBS	Chr5	23943794	C-T	HOMO
SBS	Chr6	18716028	G-C	HET
SBS	Chr7	4398475	T-A	HOMO
SBS	Chr8	15211128	A-G	HET
SBS	Chr9	1333416	T-C	HET
SBS	Chr9	4805287	G-T	HET
SBS	Chr9	18370971	G-A	HET
SBS	Chr9	18447020	A-G	HET
SBS	Chr10	1097674	T-C	HOMO
SBS	Chr10	10647710	C-T	HET
SBS	Chr10	21210078	C-T	HET
SBS	Chr11	16912977	T-A	HET
SBS	Chr11	24688007	A-T	HOMO
SBS	Chr12	13843504	G-C	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	335332	335334	3
Deletion	Chr10	443998	444007	10
Deletion	Chr11	877343	877344	2
Deletion	Chr4	1302961	1302962	2
Deletion	Chr1	4593854	4593859	6	OsKitaake01g061600
Deletion	Chr4	5383357	5383359	3
Deletion	Chr10	7217695	7217705	11	OsKitaake10g047500
Deletion	Chr10	7940996	7940997	2
Deletion	Chr4	8158366	8158368	3
Deletion	Chr8	11699932	11699941	10
Deletion	Chr2	12729447	12729450	4	OsKitaake02g142200
Deletion	Chr7	12869729	12869740	12
Deletion	Chr2	13294496	13294497	2
Deletion	Chr12	16227688	16227690	3
Deletion	Chr5	17343870	17343870	1
Deletion	Chr3	18179270	18179270	1
Deletion	Chr4	18372258	18372258	1
Deletion	Chr8	20349707	20349710	4
Deletion	Chr9	21040738	21040763	26	OsKitaake09g180800
Deletion	Chr9	22193184	22193185	2
Deletion	Chr5	22702164	22702164	1
Deletion	Chr1	24192480	24192486	7
Deletion	Chr5	27872861	27872865	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17346731	17972706
Inversion	Chr10	20521546	20767074
Inversion	Chr10	20521558	20767080
Inversion	Chr7	22252319	22252511

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes