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| Mutant Information |
|---|
| Mutant Name | FN477-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN477-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21396581 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29868573 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41204550 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33257780 | G-T | Homo | INTRON | |
| SBS | Chr3 | 6879416 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 6879417 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 9990901 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 14209848 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 16415326 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 30124531 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19480735 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 2192697 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 8585871 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11183846 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11786276 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15347347 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 28816687 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1136746 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 6067164 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8157007 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 22421241 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 1000086 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 1738843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5947082 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9829595 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 9978833 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14530980 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 17651270 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 17226655 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17559907 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13730979 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 21236277 | C-A | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2351479 | 2351485 | 6 | |
| Deletion | Chr8 | 5491410 | 5491414 | 4 | |
| Deletion | Chr5 | 5913069 | 5913074 | 5 | |
| Deletion | Chr10 | 7690191 | 7690193 | 2 | |
| Deletion | Chr12 | 7867560 | 7867563 | 3 | OsKitaake12g084200 |
| Deletion | Chr6 | 11512992 | 11513003 | 11 | |
| Deletion | Chr1 | 13660915 | 13660917 | 2 | |
| Deletion | Chr7 | 15825918 | 15825919 | 1 | |
| Deletion | Chr7 | 18070056 | 18070058 | 2 | |
| Deletion | Chr11 | 18934231 | 18934232 | 1 | OsKitaake11g147600 |
| Deletion | Chr2 | 23216469 | 23216470 | 1 | |
| Deletion | Chr4 | 23731867 | 23731868 | 1 | |
| Deletion | Chr2 | 25457830 | 25457833 | 3 | |
| Deletion | Chr7 | 25698986 | 25698993 | 7 | |
| Deletion | Chr5 | 29137231 | 29137237 | 6 | |
| Deletion | Chr5 | 30063976 | 30063985 | 9 | |
| Deletion | Chr1 | 38758001 | 38867000 | 108999 | 33 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 15278899 | 15278903 | 3 | |
| Insertion | Chr4 | 9487228 | 9487230 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 12378023 | 12462755 | |
| Inversion | Chr10 | 17699313 | 18125648 | |
| Inversion | Chr10 | 17699334 | 18125658 |