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| Mutant Information |
|---|
| Mutant Name | FN4775-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4775-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9515730 | T-C | HET | ||
| SBS | Chr1 | 37565831 | C-T | HOMO | ||
| SBS | Chr2 | 5676248 | A-G | HET | ||
| SBS | Chr3 | 19531076 | T-A | HOMO | ||
| SBS | Chr3 | 25159876 | C-T | HOMO | ||
| SBS | Chr3 | 27584666 | T-A | HOMO | ||
| SBS | Chr3 | 32923079 | G-C | HET | ||
| SBS | Chr4 | 28036822 | C-A | HOMO | ||
| SBS | Chr5 | 9367167 | C-G | HOMO | ||
| SBS | Chr5 | 13634283 | G-A | HET | ||
| SBS | Chr6 | 22549754 | C-T | HOMO | ||
| SBS | Chr7 | 6146004 | C-A | HOMO | ||
| SBS | Chr7 | 12155431 | G-A | HOMO | ||
| SBS | Chr7 | 15788799 | C-G | HOMO | ||
| SBS | Chr7 | 25656871 | T-C | HOMO | ||
| SBS | Chr8 | 3913980 | C-A | HOMO | ||
| SBS | Chr8 | 7697848 | A-G | HET | ||
| SBS | Chr8 | 24786795 | T-C | HET | ||
| SBS | Chr9 | 21454210 | C-G | HET | ||
| SBS | Chr10 | 22339268 | T-A | HOMO | ||
| SBS | Chr11 | 3020571 | T-G | HET | ||
| SBS | Chr11 | 3069109 | C-T | HET | OsKitaake11g043200 | |
| SBS | Chr11 | 19076146 | G-A | HET | ||
| SBS | Chr11 | 29138340 | A-G | HET | ||
| SBS | Chr12 | 18855081 | A-T | HET | ||
| SBS | Chr12 | 19388355 | C-A | HET | ||
| SBS | Chr12 | 27116446 | T-C | HET | OsKitaake12g228300 |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1691673 | 1691682 | 10 | |
| Deletion | Chr10 | 1904028 | 1904028 | 1 | |
| Deletion | Chr4 | 2122236 | 2122236 | 1 | |
| Deletion | Chr6 | 4739001 | 4760000 | 21000 | 4 |
| Deletion | Chr7 | 5757133 | 5757133 | 1 | |
| Deletion | Chr11 | 6240824 | 6240824 | 1 | |
| Deletion | Chr4 | 6541940 | 6541940 | 1 | |
| Deletion | Chr2 | 6543001 | 6576000 | 33000 | 4 |
| Deletion | Chr2 | 6694001 | 6702000 | 8000 | OsKitaake02g091200 |
| Deletion | Chr2 | 10109586 | 10109586 | 1 | |
| Deletion | Chr2 | 15042536 | 15042536 | 1 | |
| Deletion | Chr6 | 16972404 | 16972409 | 6 | |
| Deletion | Chr12 | 19825327 | 19825343 | 17 | |
| Deletion | Chr10 | 21700973 | 21700973 | 1 | |
| Deletion | Chr4 | 27535968 | 27535968 | 1 | |
| Deletion | Chr4 | 29022115 | 29022127 | 13 | OsKitaake04g219100 |
| Deletion | Chr4 | 29362477 | 29362489 | 13 | OsKitaake04g223900 |
| Deletion | Chr3 | 32303388 | 32303389 | 2 | |
| Deletion | Chr4 | 35293941 | 35293947 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 17489311 | 17489313 | 1 | |
| Insertion | Chr7 | 22798027 | 22798029 | 1 | |
| Insertion | Chr11 | 23575946 | 23575948 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 6349789 | 6520720 | |
| Inversion | Chr2 | 6349816 | 6830297 | |
| Inversion | Chr3 | 35854066 | 36533647 | |
| Inversion | Chr3 | 36841920 | 36842064 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28805142 | Chr3 | 8120420 | |
| Translocation | Chr6 | 28805154 | Chr3 | 8131706 | |
| Translocation | Chr6 | 30661058 | Chr2 | 6694116 | |
| Translocation | Chr6 | 30661065 | Chr3 | 2754949 |