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Mutant Information

Mutant Name	FN478-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN478-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19916151 T-C Homo INTERGENIC
SBS Chr1 23589158 C-T Homo INTERGENIC
SBS Chr1 31715521 T-G Hetero INTRON
SBS Chr1 32302258 A-T Hetero INTERGENIC
SBS Chr1 32411198 C-T Hetero INTERGENIC
SBS Chr2 14141049 C-T Homo INTERGENIC
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr4 3034931 G-A Hetero INTERGENIC
SBS Chr4 18667668 C-A Hetero INTERGENIC
SBS Chr4 28072689 G-A Homo INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr7 9224688 G-A Hetero INTERGENIC
SBS Chr7 15226655 G-A Homo UTR_3_PRIME
SBS Chr8 2323080 G-A Hetero UTR_3_PRIME
SBS Chr8 16679985 G-A Hetero INTERGENIC
SBS Chr10 18870699 C-T Hetero INTERGENIC
SBS Chr11 6201748 A-G Hetero INTERGENIC
SBS Chr11 13198363 C-T Hetero INTERGENIC
SBS Chr11 27427078 C-T Hetero INTRON
SBS Chr12 12661966 G-A Hetero INTERGENIC
SBS Chr12 13626335 T-G Hetero INTERGENIC
SBS Chr12 19058947 C-T Hetero INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1710956 1710970 14
Deletion Chr12 4906776 4906783 7
Deletion Chr4 7935917 7935918 1
Deletion Chr7 8683538 8683539 1
Deletion Chr6 10052887 10052888 1
Deletion Chr3 10985943 10985948 5
Deletion Chr3 17538124 17538125 1
Deletion Chr9 18229001 18265000 35999 9
Deletion Chr10 18686981 18686983 2
Deletion Chr2 18717294 18717302 8
Deletion Chr4 19818423 19818424 1
Deletion Chr1 19912907 19912914 7
Deletion Chr1 20766534 20766544 10
Deletion Chr11 20833046 20833048 2
Deletion Chr10 22124881 22124883 2
Deletion Chr6 22755794 22755801 7
Deletion Chr6 27744068 27744072 4
Deletion Chr2 29228763 29228780 17
Deletion Chr5 30258420 30258421 1
Deletion Chr3 36371796 36371798 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 25084702 25084705 2
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 13606876 13624811 OsKitaake09g091500
Inversion Chr9 13606882 13624823 OsKitaake09g091500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8040558 Chr6 28212354 OsKitaake06g257400
Translocation Chr9 18225942 Chr1 36899375 2
Translocation Chr9 18264708 Chr1 36903048 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19916151	T-C	Homo	INTERGENIC
SBS	Chr1	23589158	C-T	Homo	INTERGENIC
SBS	Chr1	31715521	T-G	Hetero	INTRON
SBS	Chr1	32302258	A-T	Hetero	INTERGENIC
SBS	Chr1	32411198	C-T	Hetero	INTERGENIC
SBS	Chr2	14141049	C-T	Homo	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr4	3034931	G-A	Hetero	INTERGENIC
SBS	Chr4	18667668	C-A	Hetero	INTERGENIC
SBS	Chr4	28072689	G-A	Homo	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr7	9224688	G-A	Hetero	INTERGENIC
SBS	Chr7	15226655	G-A	Homo	UTR_3_PRIME
SBS	Chr8	2323080	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	16679985	G-A	Hetero	INTERGENIC
SBS	Chr10	18870699	C-T	Hetero	INTERGENIC
SBS	Chr11	6201748	A-G	Hetero	INTERGENIC
SBS	Chr11	13198363	C-T	Hetero	INTERGENIC
SBS	Chr11	27427078	C-T	Hetero	INTRON
SBS	Chr12	12661966	G-A	Hetero	INTERGENIC
SBS	Chr12	13626335	T-G	Hetero	INTERGENIC
SBS	Chr12	19058947	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1710956	1710970	14
Deletion	Chr12	4906776	4906783	7
Deletion	Chr4	7935917	7935918	1
Deletion	Chr7	8683538	8683539	1
Deletion	Chr6	10052887	10052888	1
Deletion	Chr3	10985943	10985948	5
Deletion	Chr3	17538124	17538125	1
Deletion	Chr9	18229001	18265000	35999	9
Deletion	Chr10	18686981	18686983	2
Deletion	Chr2	18717294	18717302	8
Deletion	Chr4	19818423	19818424	1
Deletion	Chr1	19912907	19912914	7
Deletion	Chr1	20766534	20766544	10
Deletion	Chr11	20833046	20833048	2
Deletion	Chr10	22124881	22124883	2
Deletion	Chr6	22755794	22755801	7
Deletion	Chr6	27744068	27744072	4
Deletion	Chr2	29228763	29228780	17
Deletion	Chr5	30258420	30258421	1
Deletion	Chr3	36371796	36371798	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13606876	13624811	OsKitaake09g091500
Inversion	Chr9	13606882	13624823	OsKitaake09g091500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes