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Mutant Information

Mutant Name	FN479-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN479-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1073043 A-G Hetero INTERGENIC
SBS Chr1 32065380 C-A Hetero INTERGENIC
SBS Chr1 42388570 G-T Hetero INTERGENIC
SBS Chr3 178758 A-C Hetero INTRON
SBS Chr3 333657 T-A Hetero SYNONYMOUS_CODING
SBS Chr3 701995 A-G Hetero INTERGENIC
SBS Chr3 1051169 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g016200
SBS Chr3 3790506 C-T Hetero INTERGENIC
SBS Chr3 14142860 G-A Hetero INTERGENIC
SBS Chr3 14673500 G-A Hetero INTERGENIC
SBS Chr3 26947075 T-A Hetero INTERGENIC
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr4 1365629 C-G Hetero INTERGENIC
SBS Chr4 13527332 G-A Homo INTERGENIC
SBS Chr4 14680010 T-C Homo INTERGENIC
SBS Chr4 22635784 A-G Hetero UTR_5_PRIME
SBS Chr4 28027894 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g208800
SBS Chr5 6849696 T-A Hetero INTERGENIC
SBS Chr5 14128716 C-T Homo INTERGENIC
SBS Chr6 10860645 C-A Hetero INTERGENIC
SBS Chr6 13365732 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g141100
SBS Chr6 23565419 G-A Hetero INTERGENIC
SBS Chr7 9441413 T-C Hetero INTERGENIC
SBS Chr7 21051081 C-A Hetero INTRON
SBS Chr8 19901067 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g146500
SBS Chr8 29204004 G-A Hetero INTERGENIC
SBS Chr9 12742970 C-G Hetero INTERGENIC
SBS Chr10 7078467 C-T Hetero INTERGENIC
SBS Chr10 14636887 C-T Hetero INTERGENIC
SBS Chr10 18623064 C-T Hetero INTERGENIC
SBS Chr11 877434 A-T Homo INTERGENIC
SBS Chr11 11767425 C-G Hetero INTERGENIC
SBS Chr11 12262614 C-T Hetero INTERGENIC
SBS Chr11 27836584 G-A Homo INTERGENIC
SBS Chr12 1254090 C-G Hetero INTERGENIC
SBS Chr12 17114489 G-A Homo INTERGENIC
SBS Chr12 21732418 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1458369 1458380 11 OsKitaake11g019200
Deletion Chr8 3864435 3864436 1
Deletion Chr11 5578657 5578660 3
Deletion Chr6 8120428 8120433 5
Deletion Chr10 8675673 8675840 167
Deletion Chr1 19327511 19327512 1 OsKitaake01g193100
Deletion Chr3 19619342 19619343 1
Deletion Chr3 21987110 21987116 6
Deletion Chr1 28161189 28161527 338
Deletion Chr11 28639138 28639145 7
Deletion Chr1 32650015 32650016 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36862724 36862727 2
Insertion Chr6 16138059 16138063 3
Insertion Chr7 21603745 21603748 2
Insertion Chr3 20050183 20050185 1
Insertion Chr7 13341701 13341703 1
Insertion Chr9 10068067 10068069 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 31183390 31814021
Inversion Chr3 31183392 31814028

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 15442884 Chr4 2777897
Translocation Chr12 26693508 Chr3 133316 2
Translocation Chr12 26693510 Chr3 133320 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1073043	A-G	Hetero	INTERGENIC
SBS	Chr1	32065380	C-A	Hetero	INTERGENIC
SBS	Chr1	42388570	G-T	Hetero	INTERGENIC
SBS	Chr3	178758	A-C	Hetero	INTRON
SBS	Chr3	333657	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	701995	A-G	Hetero	INTERGENIC
SBS	Chr3	1051169	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g016200
SBS	Chr3	3790506	C-T	Hetero	INTERGENIC
SBS	Chr3	14142860	G-A	Hetero	INTERGENIC
SBS	Chr3	14673500	G-A	Hetero	INTERGENIC
SBS	Chr3	26947075	T-A	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr4	1365629	C-G	Hetero	INTERGENIC
SBS	Chr4	13527332	G-A	Homo	INTERGENIC
SBS	Chr4	14680010	T-C	Homo	INTERGENIC
SBS	Chr4	22635784	A-G	Hetero	UTR_5_PRIME
SBS	Chr4	28027894	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g208800
SBS	Chr5	6849696	T-A	Hetero	INTERGENIC
SBS	Chr5	14128716	C-T	Homo	INTERGENIC
SBS	Chr6	10860645	C-A	Hetero	INTERGENIC
SBS	Chr6	13365732	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g141100
SBS	Chr6	23565419	G-A	Hetero	INTERGENIC
SBS	Chr7	9441413	T-C	Hetero	INTERGENIC
SBS	Chr7	21051081	C-A	Hetero	INTRON
SBS	Chr8	19901067	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g146500
SBS	Chr8	29204004	G-A	Hetero	INTERGENIC
SBS	Chr9	12742970	C-G	Hetero	INTERGENIC
SBS	Chr10	7078467	C-T	Hetero	INTERGENIC
SBS	Chr10	14636887	C-T	Hetero	INTERGENIC
SBS	Chr10	18623064	C-T	Hetero	INTERGENIC
SBS	Chr11	877434	A-T	Homo	INTERGENIC
SBS	Chr11	11767425	C-G	Hetero	INTERGENIC
SBS	Chr11	12262614	C-T	Hetero	INTERGENIC
SBS	Chr11	27836584	G-A	Homo	INTERGENIC
SBS	Chr12	1254090	C-G	Hetero	INTERGENIC
SBS	Chr12	17114489	G-A	Homo	INTERGENIC
SBS	Chr12	21732418	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1458369	1458380	11	OsKitaake11g019200
Deletion	Chr8	3864435	3864436	1
Deletion	Chr11	5578657	5578660	3
Deletion	Chr6	8120428	8120433	5
Deletion	Chr10	8675673	8675840	167
Deletion	Chr1	19327511	19327512	1	OsKitaake01g193100
Deletion	Chr3	19619342	19619343	1
Deletion	Chr3	21987110	21987116	6
Deletion	Chr1	28161189	28161527	338
Deletion	Chr11	28639138	28639145	7
Deletion	Chr1	32650015	32650016	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	31183390	31814021
Inversion	Chr3	31183392	31814028

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes