Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN480-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN480-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3630697 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 951985 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g013600 |
| SBS | Chr2 | 7262362 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 13061471 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 29081185 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 34489915 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 17686540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 25912946 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 7311234 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15784824 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26838769 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29827399 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 29827400 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 35887642 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 6727689 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 12936122 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 235177 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 2029493 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 6748828 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g087900 |
| SBS | Chr6 | 11103595 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14477121 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 14592809 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3523119 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12250262 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 22527041 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3303754 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 6456625 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8360426 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 9512960 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 6126740 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11135032 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13405982 | C-T | Homo | INTRON | |
| SBS | Chr11 | 26098726 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14641488 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 25847170 | C-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 4223185 | 4223195 | 10 | |
| Deletion | Chr6 | 6831066 | 6831079 | 13 | |
| Deletion | Chr6 | 7853292 | 7853294 | 2 | |
| Deletion | Chr9 | 8763108 | 8763109 | 1 | |
| Deletion | Chr1 | 11333892 | 11333909 | 17 | OsKitaake01g138700 |
| Deletion | Chr3 | 17464184 | 17464188 | 4 | |
| Deletion | Chr7 | 22067245 | 22067246 | 1 | |
| Deletion | Chr7 | 29310527 | 29310530 | 3 | |
| Deletion | Chr4 | 32056381 | 32056465 | 84 | |
| Deletion | Chr4 | 35065457 | 35065460 | 3 | OsKitaake04g294450 |
| Deletion | Chr2 | 35361276 | 35361286 | 10 |
Insertions: 6
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 5393994 | 5623345 | |
| Inversion | Chr9 | 7181319 | 7265030 | |
| Inversion | Chr9 | 7181342 | 7547266 |