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| Mutant Information |
|---|
| Mutant Name | FN482-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN482-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6670743 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 10213226 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g128600 |
| SBS | Chr1 | 10804755 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 16736854 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23705855 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 30710803 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 17125891 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18797498 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21862694 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g212500 |
| SBS | Chr3 | 12907000 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25873498 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25911314 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3299380 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 3305561 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13200665 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 2595884 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15863308 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26995800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26995801 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20467128 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 22634874 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18212230 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 29118167 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22643417 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10699034 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 15633564 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 26749616 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13773144 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17207087 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24457185 | C-T | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 523152 | 523159 | 7 | |
| Deletion | Chr4 | 2145124 | 2145139 | 15 | |
| Deletion | Chr5 | 8019107 | 8019109 | 2 | |
| Deletion | Chr1 | 26039888 | 26039889 | 1 | |
| Deletion | Chr4 | 26983390 | 26983407 | 17 | |
| Deletion | Chr3 | 28037890 | 28037900 | 10 | |
| Deletion | Chr4 | 29331802 | 29331807 | 5 | |
| Deletion | Chr3 | 29875024 | 29875040 | 16 | |
| Deletion | Chr4 | 31554845 | 31554850 | 5 | OsKitaake04g248400 |
| Deletion | Chr4 | 34321860 | 34321861 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 38734287 | 38734292 | 4 | |
| Insertion | Chr3 | 8143087 | 8143090 | 2 | |
| Insertion | Chr11 | 7137989 | 7137992 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 24284328 | 25209156 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 27927715 | Chr3 | 3917680 | OsKitaake08g233700 |