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Mutant Information

Mutant Name	FN483-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN483-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16740886 C-T Hetero INTERGENIC
SBS Chr1 28766867 C-T Hetero INTRON
SBS Chr1 29165747 G-A Hetero INTERGENIC
SBS Chr1 31262113 G-A Homo INTERGENIC
SBS Chr1 43707868 C-T Hetero INTRON
SBS Chr2 2683179 T-G Hetero INTERGENIC
SBS Chr2 16650602 C-G Hetero INTERGENIC
SBS Chr2 37137377 C-T Hetero INTERGENIC
SBS Chr3 8715082 A-T Hetero INTRON
SBS Chr3 10972415 A-T Hetero SYNONYMOUS_CODING
SBS Chr4 197402 A-T Hetero INTRON
SBS Chr4 6083299 C-T Hetero INTERGENIC
SBS Chr4 24508794 A-T Homo INTERGENIC
SBS Chr4 26871118 C-G Hetero INTERGENIC
SBS Chr4 28303200 C-A Hetero UTR_5_PRIME
SBS Chr5 6167789 G-A Hetero INTERGENIC
SBS Chr5 6167790 G-A Hetero INTERGENIC
SBS Chr5 8244427 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g080500
SBS Chr5 9069194 T-A Hetero INTRON
SBS Chr5 9069201 G-A Hetero INTRON
SBS Chr5 18635577 G-A Homo INTERGENIC
SBS Chr7 17620237 T-A Hetero UTR_3_PRIME
SBS Chr7 23955957 A-G Homo INTERGENIC
SBS Chr7 28734705 T-G Hetero INTERGENIC
SBS Chr8 8448317 T-C Hetero INTERGENIC
SBS Chr8 9048474 G-T Hetero INTERGENIC
SBS Chr8 16972375 C-A Homo INTERGENIC
SBS Chr8 24983551 C-G Homo INTERGENIC
SBS Chr8 27004282 T-C Hetero INTERGENIC
SBS Chr8 28441509 T-G Hetero INTERGENIC
SBS Chr9 2904528 A-G Hetero INTERGENIC
SBS Chr9 22579946 C-A Hetero UTR_5_PRIME
SBS Chr10 150151 T-A Hetero INTERGENIC
SBS Chr10 4995244 C-T Homo INTERGENIC
SBS Chr10 8074221 A-T Homo INTRON
SBS Chr10 9185248 C-T Hetero INTERGENIC
SBS Chr10 9521231 G-T Homo INTERGENIC
SBS Chr10 10955564 A-G Homo INTERGENIC
SBS Chr10 20527100 A-C Hetero INTERGENIC
SBS Chr12 828618 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g011800
SBS Chr12 22685305 A-C Hetero INTERGENIC
SBS Chr12 26423009 A-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 375455 375457 2
Deletion Chr6 4071991 4071996 5
Deletion Chr3 5118093 5118344 251
Deletion Chr12 5874862 5874863 1
Deletion Chr5 5990001 6038000 47999 2
Deletion Chr4 6088001 6123000 34999 2
Deletion Chr3 7626911 7626912 1
Deletion Chr7 7656733 7656736 3 OsKitaake07g084600
Deletion Chr1 10116955 10116956 1
Deletion Chr2 13837961 13837963 2
Deletion Chr10 17992743 17992744 1
Deletion Chr8 19769308 19769310 2
Deletion Chr1 20178279 20178287 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 650878 650882 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 362814 666867 2
Inversion Chr8 362822 666867 2
Inversion Chr2 19982002 20091520
Inversion Chr2 19982018 20091570
Inversion Chr7 21311584 21754176 OsKitaake07g182800
Inversion Chr7 21311592 21754176 OsKitaake07g182800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 10604936 Chr2 20407049 2
Translocation Chr5 10605596 Chr2 22674553 2
Translocation Chr8 27115629 Chr7 5318380 OsKitaake08g221400
Translocation Chr8 27115633 Chr7 5317847 OsKitaake08g221400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16740886	C-T	Hetero	INTERGENIC
SBS	Chr1	28766867	C-T	Hetero	INTRON
SBS	Chr1	29165747	G-A	Hetero	INTERGENIC
SBS	Chr1	31262113	G-A	Homo	INTERGENIC
SBS	Chr1	43707868	C-T	Hetero	INTRON
SBS	Chr2	2683179	T-G	Hetero	INTERGENIC
SBS	Chr2	16650602	C-G	Hetero	INTERGENIC
SBS	Chr2	37137377	C-T	Hetero	INTERGENIC
SBS	Chr3	8715082	A-T	Hetero	INTRON
SBS	Chr3	10972415	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	197402	A-T	Hetero	INTRON
SBS	Chr4	6083299	C-T	Hetero	INTERGENIC
SBS	Chr4	24508794	A-T	Homo	INTERGENIC
SBS	Chr4	26871118	C-G	Hetero	INTERGENIC
SBS	Chr4	28303200	C-A	Hetero	UTR_5_PRIME
SBS	Chr5	6167789	G-A	Hetero	INTERGENIC
SBS	Chr5	6167790	G-A	Hetero	INTERGENIC
SBS	Chr5	8244427	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g080500
SBS	Chr5	9069194	T-A	Hetero	INTRON
SBS	Chr5	9069201	G-A	Hetero	INTRON
SBS	Chr5	18635577	G-A	Homo	INTERGENIC
SBS	Chr7	17620237	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	23955957	A-G	Homo	INTERGENIC
SBS	Chr7	28734705	T-G	Hetero	INTERGENIC
SBS	Chr8	8448317	T-C	Hetero	INTERGENIC
SBS	Chr8	9048474	G-T	Hetero	INTERGENIC
SBS	Chr8	16972375	C-A	Homo	INTERGENIC
SBS	Chr8	24983551	C-G	Homo	INTERGENIC
SBS	Chr8	27004282	T-C	Hetero	INTERGENIC
SBS	Chr8	28441509	T-G	Hetero	INTERGENIC
SBS	Chr9	2904528	A-G	Hetero	INTERGENIC
SBS	Chr9	22579946	C-A	Hetero	UTR_5_PRIME
SBS	Chr10	150151	T-A	Hetero	INTERGENIC
SBS	Chr10	4995244	C-T	Homo	INTERGENIC
SBS	Chr10	8074221	A-T	Homo	INTRON
SBS	Chr10	9185248	C-T	Hetero	INTERGENIC
SBS	Chr10	9521231	G-T	Homo	INTERGENIC
SBS	Chr10	10955564	A-G	Homo	INTERGENIC
SBS	Chr10	20527100	A-C	Hetero	INTERGENIC
SBS	Chr12	828618	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g011800
SBS	Chr12	22685305	A-C	Hetero	INTERGENIC
SBS	Chr12	26423009	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	375455	375457	2
Deletion	Chr6	4071991	4071996	5
Deletion	Chr3	5118093	5118344	251
Deletion	Chr12	5874862	5874863	1
Deletion	Chr5	5990001	6038000	47999	2
Deletion	Chr4	6088001	6123000	34999	2
Deletion	Chr3	7626911	7626912	1
Deletion	Chr7	7656733	7656736	3	OsKitaake07g084600
Deletion	Chr1	10116955	10116956	1
Deletion	Chr2	13837961	13837963	2
Deletion	Chr10	17992743	17992744	1
Deletion	Chr8	19769308	19769310	2
Deletion	Chr1	20178279	20178287	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	362814	666867	2
Inversion	Chr8	362822	666867	2
Inversion	Chr2	19982002	20091520
Inversion	Chr2	19982018	20091570
Inversion	Chr7	21311584	21754176	OsKitaake07g182800
Inversion	Chr7	21311592	21754176	OsKitaake07g182800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes