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Mutant Information

Mutant Name	FN484-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN484-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 147263 T-C Hetero UTR_5_PRIME
SBS Chr1 22692183 C-T Hetero INTERGENIC
SBS Chr2 4835120 G-C Hetero INTERGENIC
SBS Chr2 17448507 C-A Homo INTRON
SBS Chr2 30394424 G-A Hetero INTERGENIC
SBS Chr3 7301491 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g101800
SBS Chr3 7301492 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g101800
SBS Chr3 14051799 G-A Hetero INTRON
SBS Chr3 28056612 T-C Homo INTRON
SBS Chr3 35222644 T-A Homo INTERGENIC
SBS Chr4 8763958 T-A Hetero INTERGENIC
SBS Chr5 2760186 G-T Hetero INTERGENIC
SBS Chr5 6653341 T-C Hetero INTERGENIC
SBS Chr5 20376056 G-A Hetero INTERGENIC
SBS Chr5 23895148 C-G Hetero INTERGENIC
SBS Chr6 1193183 G-A Hetero INTERGENIC
SBS Chr6 12393850 A-T Homo INTRON
SBS Chr7 1474693 G-C Homo UTR_3_PRIME
SBS Chr7 2285950 A-G Hetero INTERGENIC
SBS Chr8 8629529 T-C Hetero INTRON
SBS Chr8 11545797 C-T Homo INTERGENIC
SBS Chr8 15637334 G-A Homo INTERGENIC
SBS Chr8 20018882 A-G Hetero INTERGENIC
SBS Chr8 22940927 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g175700
SBS Chr10 3807527 T-G Hetero INTERGENIC
SBS Chr10 10202113 G-T Homo INTERGENIC
SBS Chr10 20650227 C-T Hetero INTERGENIC
SBS Chr12 5184747 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g065600
SBS Chr12 6677186 C-T Homo INTERGENIC
SBS Chr12 11603605 C-T Homo INTERGENIC
SBS Chr12 14255266 A-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1156642 1156851 209
Deletion Chr9 2236605 2236609 4
Deletion Chr3 2878009 2878010 1
Deletion Chr6 7628625 7628627 2
Deletion Chr3 7725476 7725692 216
Deletion Chr8 10238767 10238779 12
Deletion Chr3 13892001 13947000 54999 6
Deletion Chr9 18073050 18073052 2
Deletion Chr5 19971487 19971492 5
Deletion Chr7 24692087 24692103 16
Deletion Chr7 26664602 26664603 1
Deletion Chr3 27798358 27798366 8
Deletion Chr6 30135873 30135883 10
Deletion Chr2 31305143 31305145 2
Deletion Chr2 36674877 36674878 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 19192001 19192004 2
Insertion Chr11 26444217 26444220 2
Insertion Chr1 25385548 25385551 2
Insertion Chr6 4888 4891 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 17861 18209 OsKitaake12g000100
Inversion Chr3 18985021 18985222

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8658993 Chr1 17293163 OsKitaake10g053166

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	147263	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	22692183	C-T	Hetero	INTERGENIC
SBS	Chr2	4835120	G-C	Hetero	INTERGENIC
SBS	Chr2	17448507	C-A	Homo	INTRON
SBS	Chr2	30394424	G-A	Hetero	INTERGENIC
SBS	Chr3	7301491	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g101800
SBS	Chr3	7301492	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g101800
SBS	Chr3	14051799	G-A	Hetero	INTRON
SBS	Chr3	28056612	T-C	Homo	INTRON
SBS	Chr3	35222644	T-A	Homo	INTERGENIC
SBS	Chr4	8763958	T-A	Hetero	INTERGENIC
SBS	Chr5	2760186	G-T	Hetero	INTERGENIC
SBS	Chr5	6653341	T-C	Hetero	INTERGENIC
SBS	Chr5	20376056	G-A	Hetero	INTERGENIC
SBS	Chr5	23895148	C-G	Hetero	INTERGENIC
SBS	Chr6	1193183	G-A	Hetero	INTERGENIC
SBS	Chr6	12393850	A-T	Homo	INTRON
SBS	Chr7	1474693	G-C	Homo	UTR_3_PRIME
SBS	Chr7	2285950	A-G	Hetero	INTERGENIC
SBS	Chr8	8629529	T-C	Hetero	INTRON
SBS	Chr8	11545797	C-T	Homo	INTERGENIC
SBS	Chr8	15637334	G-A	Homo	INTERGENIC
SBS	Chr8	20018882	A-G	Hetero	INTERGENIC
SBS	Chr8	22940927	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g175700
SBS	Chr10	3807527	T-G	Hetero	INTERGENIC
SBS	Chr10	10202113	G-T	Homo	INTERGENIC
SBS	Chr10	20650227	C-T	Hetero	INTERGENIC
SBS	Chr12	5184747	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g065600
SBS	Chr12	6677186	C-T	Homo	INTERGENIC
SBS	Chr12	11603605	C-T	Homo	INTERGENIC
SBS	Chr12	14255266	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1156642	1156851	209
Deletion	Chr9	2236605	2236609	4
Deletion	Chr3	2878009	2878010	1
Deletion	Chr6	7628625	7628627	2
Deletion	Chr3	7725476	7725692	216
Deletion	Chr8	10238767	10238779	12
Deletion	Chr3	13892001	13947000	54999	6
Deletion	Chr9	18073050	18073052	2
Deletion	Chr5	19971487	19971492	5
Deletion	Chr7	24692087	24692103	16
Deletion	Chr7	26664602	26664603	1
Deletion	Chr3	27798358	27798366	8
Deletion	Chr6	30135873	30135883	10
Deletion	Chr2	31305143	31305145	2
Deletion	Chr2	36674877	36674878	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	17861	18209	OsKitaake12g000100
Inversion	Chr3	18985021	18985222

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes