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Mutant Information

Mutant Name	FN485-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN485-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32944933 C-T Hetero INTERGENIC
SBS Chr1 33388362 T-C Homo SYNONYMOUS_CODING
SBS Chr2 34105572 C-T Hetero INTERGENIC
SBS Chr3 6413581 A-G Hetero INTERGENIC
SBS Chr3 15138847 C-A Hetero INTERGENIC
SBS Chr3 25960962 A-T Homo INTERGENIC
SBS Chr3 27026253 G-A Homo INTERGENIC
SBS Chr4 7764345 G-A Hetero INTERGENIC
SBS Chr4 13745505 A-T Hetero INTERGENIC
SBS Chr4 27058369 C-T Hetero INTERGENIC
SBS Chr4 32227907 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g256500
SBS Chr6 11438721 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g126400
SBS Chr6 13450172 G-A Homo INTRON
SBS Chr7 14413144 G-A Hetero INTERGENIC
SBS Chr9 4324537 A-T Hetero INTERGENIC
SBS Chr9 11616844 C-A Hetero INTERGENIC
SBS Chr10 7549409 C-T Hetero INTERGENIC
SBS Chr10 10695911 C-A Hetero INTERGENIC
SBS Chr10 15732988 G-C Homo INTERGENIC
SBS Chr10 18037605 C-A Hetero INTERGENIC
SBS Chr11 2922405 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g041300
SBS Chr11 7747990 T-C Hetero START_GAINED
SBS Chr11 18431623 G-A Hetero INTERGENIC
SBS Chr11 20639906 G-A Hetero UTR_5_PRIME
SBS Chr12 22639461 A-T Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4146503 4146504 1
Deletion Chr10 4231454 4231580 126
Deletion Chr6 13429001 13472000 42999 4
Deletion Chr3 21066191 21066193 2
Deletion Chr9 21792162 21792175 13
Deletion Chr3 23126110 23126128 18
Deletion Chr5 23352728 23353144 416
Deletion Chr11 25202676 25202684 8
Deletion Chr6 26558001 26572000 13999
Deletion Chr3 26709624 26709626 2
Deletion Chr8 27729589 27729596 7
Deletion Chr3 35648307 35648309 2
Deletion Chr1 37382645 37382648 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 5277268 5277271 2
Insertion Chr6 443 445 1
Insertion Chr8 8067714 8067716 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 5985253 6397338
Inversion Chr11 5985263 6397341
Inversion Chr8 12335531 12335790
Inversion Chr8 12335555 12335792
Inversion Chr8 23290007 23352472
Inversion Chr8 23290008 23352467

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 7884768 Chr6 27169198
Translocation Chr11 7885032 Chr6 26765064
Translocation Chr6 26557781 Chr4 31311804 2
Translocation Chr6 26942475 Chr4 31310334 OsKitaake04g245000
Translocation Chr6 27169199 Chr5 19048409

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32944933	C-T	Hetero	INTERGENIC
SBS	Chr1	33388362	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr2	34105572	C-T	Hetero	INTERGENIC
SBS	Chr3	6413581	A-G	Hetero	INTERGENIC
SBS	Chr3	15138847	C-A	Hetero	INTERGENIC
SBS	Chr3	25960962	A-T	Homo	INTERGENIC
SBS	Chr3	27026253	G-A	Homo	INTERGENIC
SBS	Chr4	7764345	G-A	Hetero	INTERGENIC
SBS	Chr4	13745505	A-T	Hetero	INTERGENIC
SBS	Chr4	27058369	C-T	Hetero	INTERGENIC
SBS	Chr4	32227907	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g256500
SBS	Chr6	11438721	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g126400
SBS	Chr6	13450172	G-A	Homo	INTRON
SBS	Chr7	14413144	G-A	Hetero	INTERGENIC
SBS	Chr9	4324537	A-T	Hetero	INTERGENIC
SBS	Chr9	11616844	C-A	Hetero	INTERGENIC
SBS	Chr10	7549409	C-T	Hetero	INTERGENIC
SBS	Chr10	10695911	C-A	Hetero	INTERGENIC
SBS	Chr10	15732988	G-C	Homo	INTERGENIC
SBS	Chr10	18037605	C-A	Hetero	INTERGENIC
SBS	Chr11	2922405	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g041300
SBS	Chr11	7747990	T-C	Hetero	START_GAINED
SBS	Chr11	18431623	G-A	Hetero	INTERGENIC
SBS	Chr11	20639906	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	22639461	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4146503	4146504	1
Deletion	Chr10	4231454	4231580	126
Deletion	Chr6	13429001	13472000	42999	4
Deletion	Chr3	21066191	21066193	2
Deletion	Chr9	21792162	21792175	13
Deletion	Chr3	23126110	23126128	18
Deletion	Chr5	23352728	23353144	416
Deletion	Chr11	25202676	25202684	8
Deletion	Chr6	26558001	26572000	13999
Deletion	Chr3	26709624	26709626	2
Deletion	Chr8	27729589	27729596	7
Deletion	Chr3	35648307	35648309	2
Deletion	Chr1	37382645	37382648	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5985253	6397338
Inversion	Chr11	5985263	6397341
Inversion	Chr8	12335531	12335790
Inversion	Chr8	12335555	12335792
Inversion	Chr8	23290007	23352472
Inversion	Chr8	23290008	23352467

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes