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| Mutant Information |
|---|
| Mutant Name | FN4853-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4853-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 52
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10194021 | A-T | HET | ||
| SBS | Chr1 | 13942425 | C-T | HET | ||
| SBS | Chr1 | 14262458 | C-T | HET | ||
| SBS | Chr2 | 21544841 | C-T | HET | ||
| SBS | Chr2 | 26962203 | A-T | HET | ||
| SBS | Chr2 | 33995216 | G-A | HET | ||
| SBS | Chr2 | 35008457 | G-A | HET | ||
| SBS | Chr3 | 6679633 | G-A | HOMO | ||
| SBS | Chr3 | 12503856 | G-C | HOMO | ||
| SBS | Chr3 | 23153400 | C-T | HET | ||
| SBS | Chr3 | 32439725 | A-C | HET | ||
| SBS | Chr3 | 33898213 | T-C | HET | ||
| SBS | Chr3 | 37230680 | T-A | HOMO | ||
| SBS | Chr3 | 37735880 | A-G | HET | OsKitaake03g424000 | |
| SBS | Chr4 | 6243642 | G-A | HOMO | ||
| SBS | Chr4 | 6585672 | T-C | HOMO | ||
| SBS | Chr4 | 13420655 | A-G | HOMO | ||
| SBS | Chr4 | 15746521 | T-C | HOMO | ||
| SBS | Chr4 | 18058562 | C-T | HET | ||
| SBS | Chr5 | 8473888 | C-A | HOMO | ||
| SBS | Chr5 | 15016654 | C-A | HOMO | ||
| SBS | Chr5 | 16550097 | C-T | HOMO | ||
| SBS | Chr5 | 18061230 | G-T | HET | ||
| SBS | Chr5 | 19856711 | G-T | HET | ||
| SBS | Chr5 | 21021747 | T-C | HET | ||
| SBS | Chr6 | 23450222 | C-A | HET | ||
| SBS | Chr6 | 27527635 | T-A | HET | OsKitaake06g248900 | |
| SBS | Chr6 | 27742681 | C-T | HET | ||
| SBS | Chr6 | 28497567 | C-T | HET | ||
| SBS | Chr7 | 20807608 | A-C | HET | ||
| SBS | Chr7 | 25331649 | C-T | HET | ||
| SBS | Chr8 | 4600854 | T-A | HET | ||
| SBS | Chr8 | 14574694 | G-A | HET | OsKitaake08g114500 | |
| SBS | Chr8 | 19823558 | T-C | HOMO | ||
| SBS | Chr9 | 1384570 | C-T | HET | ||
| SBS | Chr9 | 5157060 | A-G | HET | ||
| SBS | Chr9 | 9004853 | C-T | HOMO | ||
| SBS | Chr9 | 16203774 | C-G | HET | ||
| SBS | Chr9 | 19273123 | A-T | HET | ||
| SBS | Chr9 | 22312913 | C-T | HET | ||
| SBS | Chr10 | 7088737 | C-T | HET | ||
| SBS | Chr10 | 14573614 | C-T | HOMO | ||
| SBS | Chr10 | 14641301 | T-C | HOMO | ||
| SBS | Chr10 | 14676044 | C-T | HOMO | ||
| SBS | Chr10 | 20037849 | A-G | HET | ||
| SBS | Chr11 | 20222831 | A-C | HET | ||
| SBS | Chr11 | 24189576 | C-T | HET | ||
| SBS | Chr12 | 10673439 | A-G | HET | ||
| SBS | Chr12 | 18879695 | C-T | HET | ||
| SBS | Chr12 | 18879701 | A-T | HET | ||
| SBS | Chr12 | 21255227 | A-G | HOMO | ||
| SBS | Chr12 | 22249276 | A-T | HET |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2272696 | 2272696 | 1 | |
| Deletion | Chr12 | 2711872 | 2711874 | 3 | |
| Deletion | Chr9 | 2889165 | 2889172 | 8 | |
| Deletion | Chr9 | 3245302 | 3245302 | 1 | |
| Deletion | Chr5 | 3649080 | 3649080 | 1 | |
| Deletion | Chr11 | 5085216 | 5085217 | 2 | |
| Deletion | Chr8 | 7481352 | 7481352 | 1 | |
| Deletion | Chr10 | 10545099 | 10545103 | 5 | |
| Deletion | Chr3 | 10830559 | 10830566 | 8 | |
| Deletion | Chr1 | 14935001 | 14958000 | 23000 | OsKitaake01g142200 |
| Deletion | Chr3 | 15543407 | 15543407 | 1 | |
| Deletion | Chr11 | 17361367 | 17361378 | 12 | OsKitaake11g135700 |
| Deletion | Chr1 | 21647678 | 21647678 | 1 | |
| Deletion | Chr8 | 21687420 | 21687421 | 2 | |
| Deletion | Chr10 | 21703676 | 21703676 | 1 | |
| Deletion | Chr5 | 22411876 | 22411877 | 2 | 2 |
| Deletion | Chr11 | 22967343 | 22967343 | 1 | |
| Deletion | Chr11 | 29554879 | 29554881 | 3 | |
| Deletion | Chr1 | 30955105 | 30955105 | 1 | |
| Deletion | Chr2 | 34765001 | 34778000 | 13000 | 3 |
| Deletion | Chr3 | 37479983 | 37479983 | 1 | OsKitaake03g420400 |
Insertions: 10
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 9329185 | Chr9 | 21841288 | OsKitaake09g193100 |
| Translocation | Chr10 | 9329194 | Chr9 | 21840557 | OsKitaake09g193100 |