Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN486-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN486-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21596593 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43524012 | G-A | Homo | INTRON | |
| SBS | Chr2 | 8963376 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 9957757 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16769477 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 18061888 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 36493142 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 36947445 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 8214985 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 10087289 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16644692 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18702840 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 9772924 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13561047 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13561048 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18692264 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 19969233 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23391891 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25839592 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19988115 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7759367 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7954042 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 12549070 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 17695556 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 27729059 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28824797 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 11052813 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17624678 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 2267403 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 11383964 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 13925549 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 10374521 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10693232 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 6059867 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 17345953 | C-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 336410 | 336411 | 1 | |
| Deletion | Chr12 | 516941 | 516942 | 1 | |
| Deletion | Chr8 | 3248057 | 3248062 | 5 | |
| Deletion | Chr2 | 10247077 | 10247083 | 6 | |
| Deletion | Chr6 | 13562001 | 13570000 | 7999 | OsKitaake06g142300 |
| Deletion | Chr2 | 16130455 | 16130457 | 2 | |
| Deletion | Chr11 | 16648036 | 16648038 | 2 | |
| Deletion | Chr5 | 21824294 | 21824295 | 1 | OsKitaake05g178300 |
| Deletion | Chr12 | 22737686 | 22737687 | 1 | |
| Deletion | Chr6 | 22918555 | 22918556 | 1 | |
| Deletion | Chr3 | 28516409 | 28516411 | 2 | |
| Deletion | Chr4 | 28541969 | 28541971 | 2 | |
| Deletion | Chr3 | 29087341 | 29087344 | 3 | |
| Deletion | Chr8 | 29145562 | 29145564 | 2 | |
| Deletion | Chr1 | 38467258 | 38467266 | 8 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 27047554 | 27047557 | 2 | |
| Insertion | Chr6 | 26673352 | 26673355 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 17441292 | 17529703 | OsKitaake09g131100 |
| Inversion | Chr9 | 17441294 | 17529709 | OsKitaake09g131100 |
| Inversion | Chr2 | 35200731 | 35300954 | OsKitaake02g368700 |
| Inversion | Chr2 | 35200747 | 35300956 | OsKitaake02g368700 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 6389671 | Chr1 | 30129469 | OsKitaake11g076000 |
| Translocation | Chr11 | 6389729 | Chr1 | 30129919 | OsKitaake11g076000 |
| Translocation | Chr12 | 25509540 | Chr2 | 10100317 |