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| Mutant Information |
|---|
| Mutant Name | FN4862-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4862-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22063654 | C-T | HET | ||
| SBS | Chr1 | 36243038 | G-A | HET | ||
| SBS | Chr1 | 40455917 | T-C | HET | ||
| SBS | Chr1 | 42966546 | G-A | HET | ||
| SBS | Chr1 | 43647004 | A-T | HET | ||
| SBS | Chr2 | 197326 | T-A | HET | ||
| SBS | Chr2 | 3733224 | A-G | HET | ||
| SBS | Chr2 | 11079894 | G-T | HOMO | ||
| SBS | Chr2 | 14792891 | A-G | HET | ||
| SBS | Chr2 | 15127318 | G-A | HOMO | ||
| SBS | Chr2 | 24024985 | G-C | HET | OsKitaake02g236100 | |
| SBS | Chr2 | 26560523 | G-C | HET | ||
| SBS | Chr3 | 1028151 | G-T | HET | ||
| SBS | Chr4 | 5019910 | T-C | HET | ||
| SBS | Chr4 | 7712618 | G-A | HOMO | ||
| SBS | Chr4 | 10322307 | G-A | HOMO | ||
| SBS | Chr4 | 16293837 | G-A | HOMO | ||
| SBS | Chr4 | 27445093 | G-T | HET | ||
| SBS | Chr5 | 3017916 | C-A | HOMO | ||
| SBS | Chr5 | 9126613 | A-T | HET | ||
| SBS | Chr5 | 21364821 | T-C | HET | ||
| SBS | Chr5 | 21956710 | C-T | HET | ||
| SBS | Chr6 | 1066762 | G-C | HET | ||
| SBS | Chr6 | 29715860 | C-T | HOMO | ||
| SBS | Chr7 | 1572297 | A-T | HET | ||
| SBS | Chr7 | 5606296 | G-C | HOMO | ||
| SBS | Chr7 | 20883408 | A-G | HOMO | ||
| SBS | Chr7 | 24602087 | G-T | HOMO | ||
| SBS | Chr11 | 10243409 | C-T | HET | ||
| SBS | Chr11 | 11367210 | C-A | HET | ||
| SBS | Chr11 | 11615143 | T-C | HET | ||
| SBS | Chr12 | 3361447 | C-G | HET | ||
| SBS | Chr12 | 3851844 | C-T | HET | ||
| SBS | Chr12 | 4604754 | A-T | HOMO | ||
| SBS | Chr12 | 6945475 | C-T | HOMO |
Deletions: 8
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 41151750 | 41151752 | 1 | |
| Insertion | Chr10 | 16529336 | 16529338 | 1 | |
| Insertion | Chr3 | 1078527 | 1078529 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 14392796 | 14573148 | OsKitaake09g097700 |
| Inversion | Chr9 | 14573150 | 14704213 | |
| Inversion | Chr6 | 17533661 | 17969703 | |
| Inversion | Chr6 | 17533678 | 17969712 | |
| Inversion | Chr2 | 23428194 | 23607980 | OsKitaake02g231700 |
| Inversion | Chr3 | 35045557 | 35045984 |