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Mutant Information

Mutant Name	FN487-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN487-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18677044 T-A Hetero INTERGENIC
SBS Chr2 15179188 C-T Hetero INTERGENIC
SBS Chr2 23118503 G-A Hetero INTERGENIC
SBS Chr2 26289813 A-G Hetero INTERGENIC
SBS Chr3 6185680 G-C Hetero UTR_3_PRIME
SBS Chr3 15063773 T-C Hetero UTR_5_PRIME
SBS Chr3 24722367 C-A Hetero INTERGENIC
SBS Chr3 27994603 T-A Hetero INTERGENIC
SBS Chr3 28770341 C-T Homo INTERGENIC
SBS Chr4 11300816 T-C Hetero INTERGENIC
SBS Chr4 31928985 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g253400
SBS Chr4 32719785 T-C Hetero UTR_3_PRIME
SBS Chr5 3527158 A-G Hetero INTRON
SBS Chr5 11726832 G-T Hetero INTERGENIC
SBS Chr6 8774408 C-G Hetero INTERGENIC
SBS Chr6 8774409 C-T Hetero INTERGENIC
SBS Chr6 12729955 T-C Hetero INTERGENIC
SBS Chr7 527011 G-A Hetero INTERGENIC
SBS Chr7 9507618 G-A Hetero INTERGENIC
SBS Chr7 15853381 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g131600
SBS Chr7 16324743 A-C Hetero INTERGENIC
SBS Chr7 28522125 A-G Hetero INTRON
SBS Chr8 2400901 A-G Hetero INTERGENIC
SBS Chr8 4181956 G-A Hetero INTERGENIC
SBS Chr8 22454232 G-T Hetero INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr8 27190949 T-C Hetero UTR_3_PRIME
SBS Chr9 14508498 A-G Hetero INTERGENIC
SBS Chr9 18650851 C-T Hetero INTRON
SBS Chr9 18880964 T-A Hetero INTERGENIC
SBS Chr10 18406112 G-T Hetero INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 21426406 C-G Homo INTERGENIC
SBS Chr11 28528945 G-A Homo SYNONYMOUS_CODING
SBS Chr12 2993206 A-G Hetero INTERGENIC
SBS Chr12 11622559 C-G Homo INTERGENIC
SBS Chr12 25055231 G-A Hetero INTERGENIC
SBS Chr12 25055232 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3126250 3126252 2
Deletion Chr9 7625935 7625937 2
Deletion Chr12 11652227 11652538 311
Deletion Chr8 12034001 12082000 47999 OsKitaake08g105200
Deletion Chr8 13490546 13490548 2
Deletion Chr9 17344001 17371000 26999 OsKitaake09g130300
Deletion Chr12 17388724 17388726 2
Deletion Chr10 17873810 17873812 2
Deletion Chr3 19653001 19677000 23999 2
Deletion Chr3 19681001 19715000 33999
Deletion Chr6 19886732 19886734 2
Deletion Chr11 20421729 20421730 1
Deletion Chr6 25338202 25338206 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 20352654 20352657 2
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 20720204 21263681 OsKitaake09g184000
Inversion Chr6 28586465 28586891

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 25701855 Chr1 31482263 OsKitaake01g316000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18677044	T-A	Hetero	INTERGENIC
SBS	Chr2	15179188	C-T	Hetero	INTERGENIC
SBS	Chr2	23118503	G-A	Hetero	INTERGENIC
SBS	Chr2	26289813	A-G	Hetero	INTERGENIC
SBS	Chr3	6185680	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	15063773	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	24722367	C-A	Hetero	INTERGENIC
SBS	Chr3	27994603	T-A	Hetero	INTERGENIC
SBS	Chr3	28770341	C-T	Homo	INTERGENIC
SBS	Chr4	11300816	T-C	Hetero	INTERGENIC
SBS	Chr4	31928985	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g253400
SBS	Chr4	32719785	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	3527158	A-G	Hetero	INTRON
SBS	Chr5	11726832	G-T	Hetero	INTERGENIC
SBS	Chr6	8774408	C-G	Hetero	INTERGENIC
SBS	Chr6	8774409	C-T	Hetero	INTERGENIC
SBS	Chr6	12729955	T-C	Hetero	INTERGENIC
SBS	Chr7	527011	G-A	Hetero	INTERGENIC
SBS	Chr7	9507618	G-A	Hetero	INTERGENIC
SBS	Chr7	15853381	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g131600
SBS	Chr7	16324743	A-C	Hetero	INTERGENIC
SBS	Chr7	28522125	A-G	Hetero	INTRON
SBS	Chr8	2400901	A-G	Hetero	INTERGENIC
SBS	Chr8	4181956	G-A	Hetero	INTERGENIC
SBS	Chr8	22454232	G-T	Hetero	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr8	27190949	T-C	Hetero	UTR_3_PRIME
SBS	Chr9	14508498	A-G	Hetero	INTERGENIC
SBS	Chr9	18650851	C-T	Hetero	INTRON
SBS	Chr9	18880964	T-A	Hetero	INTERGENIC
SBS	Chr10	18406112	G-T	Hetero	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	21426406	C-G	Homo	INTERGENIC
SBS	Chr11	28528945	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr12	2993206	A-G	Hetero	INTERGENIC
SBS	Chr12	11622559	C-G	Homo	INTERGENIC
SBS	Chr12	25055231	G-A	Hetero	INTERGENIC
SBS	Chr12	25055232	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3126250	3126252	2
Deletion	Chr9	7625935	7625937	2
Deletion	Chr12	11652227	11652538	311
Deletion	Chr8	12034001	12082000	47999	OsKitaake08g105200
Deletion	Chr8	13490546	13490548	2
Deletion	Chr9	17344001	17371000	26999	OsKitaake09g130300
Deletion	Chr12	17388724	17388726	2
Deletion	Chr10	17873810	17873812	2
Deletion	Chr3	19653001	19677000	23999	2
Deletion	Chr3	19681001	19715000	33999
Deletion	Chr6	19886732	19886734	2
Deletion	Chr11	20421729	20421730	1
Deletion	Chr6	25338202	25338206	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	20720204	21263681	OsKitaake09g184000
Inversion	Chr6	28586465	28586891

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes