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Mutant Information

Mutant Name	FN4872-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4872-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4828455 G-A HET
SBS Chr1 14105808 G-T HET
SBS Chr1 14878451 G-C HOMO
SBS Chr1 14886394 C-T HOMO OsKitaake01g142000
SBS Chr1 14886398 G-A HOMO OsKitaake01g142000
SBS Chr1 19987738 T-C HET
SBS Chr1 21658693 G-T HET
SBS Chr1 24834815 C-A HET
SBS Chr1 29791803 G-A HET
SBS Chr1 32000952 C-T HET
SBS Chr1 41115263 A-G HET OsKitaake01g448900
SBS Chr2 7436092 G-A HET
SBS Chr2 19026884 G-A HET
SBS Chr2 36597524 A-G HET OsKitaake02g389300
SBS Chr3 6278735 A-C HET
SBS Chr3 19609348 G-A HET
SBS Chr3 20170455 A-T HET
SBS Chr4 14167592 G-A HET
SBS Chr4 22921609 G-A HET
SBS Chr4 24416964 T-A HOMO
SBS Chr5 7040840 C-T HET
SBS Chr5 11270547 T-C HET OsKitaake05g095300
SBS Chr6 133298 T-C HET
SBS Chr6 13926013 C-A HET
SBS Chr6 20982010 T-C HET
SBS Chr6 26149866 C-T HET
SBS Chr6 27673925 G-A HET
SBS Chr7 621887 A-T HET
SBS Chr7 2363183 A-G HET
SBS Chr7 14904743 A-T HET
SBS Chr7 17537192 C-A HOMO
SBS Chr7 20522205 G-C HOMO
SBS Chr8 1433936 G-T HOMO
SBS Chr8 4128269 C-T HET OsKitaake08g046700
SBS Chr8 4771191 C-A HET
SBS Chr8 6146546 A-C HET
SBS Chr8 11553552 T-C HET
SBS Chr8 14339454 G-A HET
SBS Chr8 14753357 G-A HET
SBS Chr8 16634497 G-A HET
SBS Chr8 16873968 T-A HET
SBS Chr8 17466714 G-C HET
SBS Chr8 20590437 G-A HET
SBS Chr9 12924959 C-T HET
SBS Chr9 18560756 G-T HET
SBS Chr10 4312691 C-T HET
SBS Chr10 7059369 C-A HET
SBS Chr10 8200866 A-T HET
SBS Chr10 8808779 C-T HET
SBS Chr11 17944554 A-T HOMO
SBS Chr11 28611236 G-A HET
SBS Chr12 1995555 G-A HOMO
SBS Chr12 13362232 T-G HET OsKitaake12g111100
SBS Chr12 21949557 C-T HET
SBS Chr12 25299542 C-A HOMO

Deletions: 56

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 382461 382616 156 OsKitaake06g002666
Deletion Chr4 2022982 2022983 2 2
Deletion Chr4 2582034 2582034 1
Deletion Chr8 2829365 2829369 5
Deletion Chr7 3587483 3587490 8
Deletion Chr8 4026713 4026763 51
Deletion Chr11 5275430 5275454 25
Deletion Chr2 6389510 6389510 1
Deletion Chr3 6486601 6486601 1
Deletion Chr5 6764286 6764296 11
Deletion Chr5 7096448 7096453 6
Deletion Chr11 8089430 8089430 1
Deletion Chr8 8366529 8366531 3 2
Deletion Chr10 9052846 9052849 4 2
Deletion Chr6 9085399 9085399 1
Deletion Chr3 11405568 11405569 2
Deletion Chr6 13132001 13175000 43000
Deletion Chr9 13621047 13621057 11
Deletion Chr4 14044023 14044024 2
Deletion Chr1 14533863 14533864 2
Deletion Chr1 14533864 14533865 2
Deletion Chr3 14940506 14940506 1 2
Deletion Chr2 14980000 14980000 1 2
Deletion Chr1 15409213 15409350 138
Deletion Chr10 16761001 16914000 153000 15
Deletion Chr8 16866004 16866007 4
Deletion Chr8 16948229 16948230 2 2
Deletion Chr2 16948432 16948448 17 2
Deletion Chr11 17951817 17951849 33
Deletion Chr12 18145852 18145852 1
Deletion Chr6 19176562 19176569 8 2
Deletion Chr6 19336681 19336688 8
Deletion Chr6 19761362 19761364 3 2
Deletion Chr7 20602775 20602775 1
Deletion Chr4 20621547 20621555 9
Deletion Chr7 20663350 20663353 4
Deletion Chr3 21394920 21394922 3 2
Deletion Chr3 22168757 22168776 20 OsKitaake03g241635
Deletion Chr5 22629165 22629166 2 2
Deletion Chr5 22875001 23005000 130000 17
Deletion Chr11 23342277 23342283 7
Deletion Chr3 23797232 23797251 20
Deletion Chr12 25184405 25184413 9 OsKitaake12g204600
Deletion Chr7 25590593 25590600 8
Deletion Chr2 25806001 25916000 110000 9
Deletion Chr8 28317484 28317486 3
Deletion Chr3 28425865 28425866 2
Deletion Chr6 28713920 28713920 1 2
Deletion Chr7 29303737 29303737 1 2
Deletion Chr1 30058639 30058640 2
Deletion Chr6 30205994 30206025 32
Deletion Chr4 32118988 32118992 5 2
Deletion Chr2 32383071 32383071 1
Deletion Chr3 34799313 34799314 2
Deletion Chr1 36424017 36424017 1
Deletion Chr2 36569504 36569517 14 2

Insertions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24322516 24322518 1
Insertion Chr1 31380454 31380457 2
Insertion Chr1 44174962 44174964 1
Insertion Chr3 16065796 16065799 2
Insertion Chr3 35237573 35237576 2
Insertion Chr4 25812717 25812761 43
Insertion Chr7 10195833 10195835 1
Insertion Chr9 2483381 2483383 1
Insertion Chr11 14261831 14261834 2
Insertion Chr11 23203499 23203501 1
Insertion Chr5 27684644 27684646 1
Insertion Chr10 7990037 7990039 1
Insertion Chr11 1397330 1397333 2
Insertion Chr11 7814959 7814962 2
Insertion Chr12 2715968 2715970 1
Insertion Chr12 10596599 10596602 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1701398 1701525
Inversion Chr12 12783548 13459007
Inversion Chr12 12783556 13459008
Inversion Chr10 16372618 16760974
Inversion Chr10 16374785 16913465 OsKitaake10g110500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 14928777 Chr7 15818634
Translocation Chr11 14929452 Chr7 15818655

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4828455	G-A	HET
SBS	Chr1	14105808	G-T	HET
SBS	Chr1	14878451	G-C	HOMO
SBS	Chr1	14886394	C-T	HOMO		OsKitaake01g142000
SBS	Chr1	14886398	G-A	HOMO		OsKitaake01g142000
SBS	Chr1	19987738	T-C	HET
SBS	Chr1	21658693	G-T	HET
SBS	Chr1	24834815	C-A	HET
SBS	Chr1	29791803	G-A	HET
SBS	Chr1	32000952	C-T	HET
SBS	Chr1	41115263	A-G	HET		OsKitaake01g448900
SBS	Chr2	7436092	G-A	HET
SBS	Chr2	19026884	G-A	HET
SBS	Chr2	36597524	A-G	HET		OsKitaake02g389300
SBS	Chr3	6278735	A-C	HET
SBS	Chr3	19609348	G-A	HET
SBS	Chr3	20170455	A-T	HET
SBS	Chr4	14167592	G-A	HET
SBS	Chr4	22921609	G-A	HET
SBS	Chr4	24416964	T-A	HOMO
SBS	Chr5	7040840	C-T	HET
SBS	Chr5	11270547	T-C	HET		OsKitaake05g095300
SBS	Chr6	133298	T-C	HET
SBS	Chr6	13926013	C-A	HET
SBS	Chr6	20982010	T-C	HET
SBS	Chr6	26149866	C-T	HET
SBS	Chr6	27673925	G-A	HET
SBS	Chr7	621887	A-T	HET
SBS	Chr7	2363183	A-G	HET
SBS	Chr7	14904743	A-T	HET
SBS	Chr7	17537192	C-A	HOMO
SBS	Chr7	20522205	G-C	HOMO
SBS	Chr8	1433936	G-T	HOMO
SBS	Chr8	4128269	C-T	HET		OsKitaake08g046700
SBS	Chr8	4771191	C-A	HET
SBS	Chr8	6146546	A-C	HET
SBS	Chr8	11553552	T-C	HET
SBS	Chr8	14339454	G-A	HET
SBS	Chr8	14753357	G-A	HET
SBS	Chr8	16634497	G-A	HET
SBS	Chr8	16873968	T-A	HET
SBS	Chr8	17466714	G-C	HET
SBS	Chr8	20590437	G-A	HET
SBS	Chr9	12924959	C-T	HET
SBS	Chr9	18560756	G-T	HET
SBS	Chr10	4312691	C-T	HET
SBS	Chr10	7059369	C-A	HET
SBS	Chr10	8200866	A-T	HET
SBS	Chr10	8808779	C-T	HET
SBS	Chr11	17944554	A-T	HOMO
SBS	Chr11	28611236	G-A	HET
SBS	Chr12	1995555	G-A	HOMO
SBS	Chr12	13362232	T-G	HET		OsKitaake12g111100
SBS	Chr12	21949557	C-T	HET
SBS	Chr12	25299542	C-A	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	382461	382616	156	OsKitaake06g002666
Deletion	Chr4	2022982	2022983	2	2
Deletion	Chr4	2582034	2582034	1
Deletion	Chr8	2829365	2829369	5
Deletion	Chr7	3587483	3587490	8
Deletion	Chr8	4026713	4026763	51
Deletion	Chr11	5275430	5275454	25
Deletion	Chr2	6389510	6389510	1
Deletion	Chr3	6486601	6486601	1
Deletion	Chr5	6764286	6764296	11
Deletion	Chr5	7096448	7096453	6
Deletion	Chr11	8089430	8089430	1
Deletion	Chr8	8366529	8366531	3	2
Deletion	Chr10	9052846	9052849	4	2
Deletion	Chr6	9085399	9085399	1
Deletion	Chr3	11405568	11405569	2
Deletion	Chr6	13132001	13175000	43000
Deletion	Chr9	13621047	13621057	11
Deletion	Chr4	14044023	14044024	2
Deletion	Chr1	14533863	14533864	2
Deletion	Chr1	14533864	14533865	2
Deletion	Chr3	14940506	14940506	1	2
Deletion	Chr2	14980000	14980000	1	2
Deletion	Chr1	15409213	15409350	138
Deletion	Chr10	16761001	16914000	153000	15
Deletion	Chr8	16866004	16866007	4
Deletion	Chr8	16948229	16948230	2	2
Deletion	Chr2	16948432	16948448	17	2
Deletion	Chr11	17951817	17951849	33
Deletion	Chr12	18145852	18145852	1
Deletion	Chr6	19176562	19176569	8	2
Deletion	Chr6	19336681	19336688	8
Deletion	Chr6	19761362	19761364	3	2
Deletion	Chr7	20602775	20602775	1
Deletion	Chr4	20621547	20621555	9
Deletion	Chr7	20663350	20663353	4
Deletion	Chr3	21394920	21394922	3	2
Deletion	Chr3	22168757	22168776	20	OsKitaake03g241635
Deletion	Chr5	22629165	22629166	2	2
Deletion	Chr5	22875001	23005000	130000	17
Deletion	Chr11	23342277	23342283	7
Deletion	Chr3	23797232	23797251	20
Deletion	Chr12	25184405	25184413	9	OsKitaake12g204600
Deletion	Chr7	25590593	25590600	8
Deletion	Chr2	25806001	25916000	110000	9
Deletion	Chr8	28317484	28317486	3
Deletion	Chr3	28425865	28425866	2
Deletion	Chr6	28713920	28713920	1	2
Deletion	Chr7	29303737	29303737	1	2
Deletion	Chr1	30058639	30058640	2
Deletion	Chr6	30205994	30206025	32
Deletion	Chr4	32118988	32118992	5	2
Deletion	Chr2	32383071	32383071	1
Deletion	Chr3	34799313	34799314	2
Deletion	Chr1	36424017	36424017	1
Deletion	Chr2	36569504	36569517	14	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1701398	1701525
Inversion	Chr12	12783548	13459007
Inversion	Chr12	12783556	13459008
Inversion	Chr10	16372618	16760974
Inversion	Chr10	16374785	16913465	OsKitaake10g110500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes