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Mutant Information

Mutant Name	FN488-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN488-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1918384 C-A Homo INTERGENIC
SBS Chr1 11587881 C-A Hetero INTERGENIC
SBS Chr1 19564175 A-T Hetero INTERGENIC
SBS Chr1 34029580 C-T Homo INTRON
SBS Chr1 35513861 G-A Homo INTRON
SBS Chr1 40419343 C-T Hetero INTERGENIC
SBS Chr2 4514969 T-G Homo INTRON
SBS Chr2 8334443 T-A Hetero INTERGENIC
SBS Chr2 16215859 T-A Homo INTERGENIC
SBS Chr2 20938933 C-T Hetero INTERGENIC
SBS Chr2 33884449 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 34718366 C-T Hetero INTERGENIC
SBS Chr3 6707138 T-C Hetero INTRON
SBS Chr3 8568504 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g117400
SBS Chr3 8568505 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g117400
SBS Chr3 12637593 C-T Hetero INTERGENIC
SBS Chr3 13665768 A-C Homo UTR_3_PRIME
SBS Chr3 33494628 A-G Homo INTERGENIC
SBS Chr4 23594374 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g148300
SBS Chr4 24105653 G-T Homo INTRON
SBS Chr4 26785259 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g193400
SBS Chr4 32402070 G-A Homo INTRON
SBS Chr6 19809667 T-A Hetero INTERGENIC
SBS Chr6 19809668 T-A Hetero INTERGENIC
SBS Chr6 22280287 C-T Homo INTERGENIC
SBS Chr6 30992231 G-A Homo INTERGENIC
SBS Chr7 6398444 T-A Hetero INTRON
SBS Chr8 1939864 G-A Homo INTERGENIC
SBS Chr8 9578060 A-T Hetero INTRON
SBS Chr8 10474132 G-A Hetero INTERGENIC
SBS Chr8 16257182 C-A Hetero UTR_5_PRIME
SBS Chr8 29154769 C-T Hetero INTERGENIC
SBS Chr10 12777071 G-A Homo INTERGENIC
SBS Chr10 14656457 C-G Hetero INTERGENIC
SBS Chr11 9861963 C-A Hetero INTERGENIC
SBS Chr11 9861964 C-T Hetero INTERGENIC
SBS Chr11 10833994 G-A Hetero INTERGENIC
SBS Chr11 13912752 C-T Hetero INTRON
SBS Chr11 23414490 C-T Hetero INTERGENIC
SBS Chr12 4859558 G-T Hetero UTR_3_PRIME
SBS Chr12 5519169 T-C Hetero INTERGENIC
SBS Chr12 8262006 G-A Hetero STOP_GAINED OsKitaake12g085900
SBS Chr12 9659026 T-A Hetero INTERGENIC
SBS Chr12 25865263 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3161001 3262000 100999 8
Deletion Chr3 7857999 7858002 3
Deletion Chr9 8475748 8475750 2
Deletion Chr2 10947974 10947985 11 OsKitaake02g128100
Deletion Chr6 12245001 12267000 21999 2
Deletion Chr11 12456290 12456291 1
Deletion Chr5 12600162 12600163 1
Deletion Chr10 15289643 15289655 12
Deletion Chr10 16005296 16005300 4
Deletion Chr3 16739732 16739904 172
Deletion Chr12 18986262 18986281 19
Deletion Chr5 20642576 20642585 9
Deletion Chr10 21837806 21837810 4 OsKitaake10g176101
Deletion Chr2 22074356 22074360 4
Deletion Chr3 25507001 25533000 25999 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 8270038 8270041 2
Insertion Chr8 11558494 11558497 2
Insertion Chr11 2375977 2375980 2
Insertion Chr2 13851976 13851979 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1918384	C-A	Homo	INTERGENIC
SBS	Chr1	11587881	C-A	Hetero	INTERGENIC
SBS	Chr1	19564175	A-T	Hetero	INTERGENIC
SBS	Chr1	34029580	C-T	Homo	INTRON
SBS	Chr1	35513861	G-A	Homo	INTRON
SBS	Chr1	40419343	C-T	Hetero	INTERGENIC
SBS	Chr2	4514969	T-G	Homo	INTRON
SBS	Chr2	8334443	T-A	Hetero	INTERGENIC
SBS	Chr2	16215859	T-A	Homo	INTERGENIC
SBS	Chr2	20938933	C-T	Hetero	INTERGENIC
SBS	Chr2	33884449	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	34718366	C-T	Hetero	INTERGENIC
SBS	Chr3	6707138	T-C	Hetero	INTRON
SBS	Chr3	8568504	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g117400
SBS	Chr3	8568505	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g117400
SBS	Chr3	12637593	C-T	Hetero	INTERGENIC
SBS	Chr3	13665768	A-C	Homo	UTR_3_PRIME
SBS	Chr3	33494628	A-G	Homo	INTERGENIC
SBS	Chr4	23594374	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g148300
SBS	Chr4	24105653	G-T	Homo	INTRON
SBS	Chr4	26785259	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g193400
SBS	Chr4	32402070	G-A	Homo	INTRON
SBS	Chr6	19809667	T-A	Hetero	INTERGENIC
SBS	Chr6	19809668	T-A	Hetero	INTERGENIC
SBS	Chr6	22280287	C-T	Homo	INTERGENIC
SBS	Chr6	30992231	G-A	Homo	INTERGENIC
SBS	Chr7	6398444	T-A	Hetero	INTRON
SBS	Chr8	1939864	G-A	Homo	INTERGENIC
SBS	Chr8	9578060	A-T	Hetero	INTRON
SBS	Chr8	10474132	G-A	Hetero	INTERGENIC
SBS	Chr8	16257182	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	29154769	C-T	Hetero	INTERGENIC
SBS	Chr10	12777071	G-A	Homo	INTERGENIC
SBS	Chr10	14656457	C-G	Hetero	INTERGENIC
SBS	Chr11	9861963	C-A	Hetero	INTERGENIC
SBS	Chr11	9861964	C-T	Hetero	INTERGENIC
SBS	Chr11	10833994	G-A	Hetero	INTERGENIC
SBS	Chr11	13912752	C-T	Hetero	INTRON
SBS	Chr11	23414490	C-T	Hetero	INTERGENIC
SBS	Chr12	4859558	G-T	Hetero	UTR_3_PRIME
SBS	Chr12	5519169	T-C	Hetero	INTERGENIC
SBS	Chr12	8262006	G-A	Hetero	STOP_GAINED	OsKitaake12g085900
SBS	Chr12	9659026	T-A	Hetero	INTERGENIC
SBS	Chr12	25865263	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3161001	3262000	100999	8
Deletion	Chr3	7857999	7858002	3
Deletion	Chr9	8475748	8475750	2
Deletion	Chr2	10947974	10947985	11	OsKitaake02g128100
Deletion	Chr6	12245001	12267000	21999	2
Deletion	Chr11	12456290	12456291	1
Deletion	Chr5	12600162	12600163	1
Deletion	Chr10	15289643	15289655	12
Deletion	Chr10	16005296	16005300	4
Deletion	Chr3	16739732	16739904	172
Deletion	Chr12	18986262	18986281	19
Deletion	Chr5	20642576	20642585	9
Deletion	Chr10	21837806	21837810	4	OsKitaake10g176101
Deletion	Chr2	22074356	22074360	4
Deletion	Chr3	25507001	25533000	25999	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes