Search Kitaake

Mutant Information

Mutant Name	FN489-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN489-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4872616 A-G Hetero INTERGENIC
SBS Chr2 5684835 C-T Hetero INTERGENIC
SBS Chr2 31755804 G-A Hetero INTERGENIC
SBS Chr3 1413449 C-T Homo INTERGENIC
SBS Chr3 5673943 T-C Homo INTERGENIC
SBS Chr3 15478149 T-C Homo INTERGENIC
SBS Chr3 26705199 T-C Homo INTERGENIC
SBS Chr3 34571642 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g375600
SBS Chr4 4260465 G-A Homo INTERGENIC
SBS Chr4 10116858 G-T Homo INTERGENIC
SBS Chr4 11620544 G-A Homo INTERGENIC
SBS Chr4 21010442 T-A Hetero INTERGENIC
SBS Chr5 2871892 A-G Hetero INTRON
SBS Chr5 9311638 A-G Hetero INTERGENIC
SBS Chr6 14397793 C-T Hetero INTERGENIC
SBS Chr7 536976 C-T Homo INTERGENIC
SBS Chr7 10451099 A-G Hetero INTERGENIC
SBS Chr7 14328544 G-A Homo INTERGENIC
SBS Chr9 8162560 C-A Hetero INTERGENIC
SBS Chr9 10489499 T-C Hetero INTERGENIC
SBS Chr9 17541256 G-C Hetero INTERGENIC
SBS Chr9 18559864 G-A Hetero INTERGENIC
SBS Chr10 60697 T-A Hetero INTRON
SBS Chr10 467256 G-A Hetero INTERGENIC
SBS Chr12 841595 A-G Hetero INTRON
SBS Chr12 16981128 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2125137 2125165 28
Deletion Chr4 3456228 3456355 127
Deletion Chr1 4875135 4875137 2
Deletion Chr3 5718565 5718566 1
Deletion Chr10 6160379 6160384 5
Deletion Chr6 8965181 8965190 9
Deletion Chr4 13827636 13827641 5
Deletion Chr10 14262627 14262649 22
Deletion Chr6 14402001 14631000 228999 8
Deletion Chr3 15390726 15390727 1
Deletion Chr6 15672903 15672905 2
Deletion Chr11 25196038 25196048 10
Deletion Chr11 26482466 26482483 17

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8297934 8297937 2
Insertion Chr4 25185161 25185164 2
Insertion Chr9 13607815 13607818 2
Insertion Chr10 17550504 17550507 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 1651060 1728609 2
Inversion Chr1 36252495 36252786 OsKitaake01g384600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6270930 Chr5 20468476 OsKitaake05g162800
Translocation Chr11 6270940 Chr5 20458918
Translocation Chr2 31018053 Chr1 43131669 OsKitaake02g316800
Translocation Chr2 31019360 Chr1 43131670

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4872616	A-G	Hetero	INTERGENIC
SBS	Chr2	5684835	C-T	Hetero	INTERGENIC
SBS	Chr2	31755804	G-A	Hetero	INTERGENIC
SBS	Chr3	1413449	C-T	Homo	INTERGENIC
SBS	Chr3	5673943	T-C	Homo	INTERGENIC
SBS	Chr3	15478149	T-C	Homo	INTERGENIC
SBS	Chr3	26705199	T-C	Homo	INTERGENIC
SBS	Chr3	34571642	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g375600
SBS	Chr4	4260465	G-A	Homo	INTERGENIC
SBS	Chr4	10116858	G-T	Homo	INTERGENIC
SBS	Chr4	11620544	G-A	Homo	INTERGENIC
SBS	Chr4	21010442	T-A	Hetero	INTERGENIC
SBS	Chr5	2871892	A-G	Hetero	INTRON
SBS	Chr5	9311638	A-G	Hetero	INTERGENIC
SBS	Chr6	14397793	C-T	Hetero	INTERGENIC
SBS	Chr7	536976	C-T	Homo	INTERGENIC
SBS	Chr7	10451099	A-G	Hetero	INTERGENIC
SBS	Chr7	14328544	G-A	Homo	INTERGENIC
SBS	Chr9	8162560	C-A	Hetero	INTERGENIC
SBS	Chr9	10489499	T-C	Hetero	INTERGENIC
SBS	Chr9	17541256	G-C	Hetero	INTERGENIC
SBS	Chr9	18559864	G-A	Hetero	INTERGENIC
SBS	Chr10	60697	T-A	Hetero	INTRON
SBS	Chr10	467256	G-A	Hetero	INTERGENIC
SBS	Chr12	841595	A-G	Hetero	INTRON
SBS	Chr12	16981128	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2125137	2125165	28
Deletion	Chr4	3456228	3456355	127
Deletion	Chr1	4875135	4875137	2
Deletion	Chr3	5718565	5718566	1
Deletion	Chr10	6160379	6160384	5
Deletion	Chr6	8965181	8965190	9
Deletion	Chr4	13827636	13827641	5
Deletion	Chr10	14262627	14262649	22
Deletion	Chr6	14402001	14631000	228999	8
Deletion	Chr3	15390726	15390727	1
Deletion	Chr6	15672903	15672905	2
Deletion	Chr11	25196038	25196048	10
Deletion	Chr11	26482466	26482483	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1651060	1728609	2
Inversion	Chr1	36252495	36252786	OsKitaake01g384600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes