Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN490-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN490-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16469778 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16469779 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 32767694 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 3252855 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 33762946 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 4393532 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5827777 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20658422 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 246459 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16910821 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18139991 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 18139992 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19838774 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 20999160 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27161224 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 5634977 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 17074597 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 9714848 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10420169 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 17198276 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14172646 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15587602 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26501439 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 10739604 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13742568 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15559907 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 19853109 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 8822376 | C-T | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 793826 | 793833 | 7 | |
| Deletion | Chr5 | 6109473 | 6109475 | 2 | |
| Deletion | Chr5 | 7947727 | 7947733 | 6 | |
| Deletion | Chr2 | 10266413 | 10266415 | 2 | |
| Deletion | Chr4 | 11398001 | 11578000 | 179999 | OsKitaake04g056800 |
| Deletion | Chr5 | 13847344 | 13847345 | 1 | |
| Deletion | Chr5 | 15574767 | 15574768 | 1 | |
| Deletion | Chr9 | 18983775 | 18983785 | 10 | |
| Deletion | Chr8 | 19207059 | 19207061 | 2 | |
| Deletion | Chr2 | 19388953 | 19388954 | 1 | |
| Deletion | Chr4 | 20516149 | 20516154 | 5 | |
| Deletion | Chr8 | 24877822 | 24877826 | 4 | |
| Deletion | Chr12 | 26130530 | 26130532 | 2 | |
| Deletion | Chr2 | 26671127 | 26671129 | 2 | |
| Deletion | Chr5 | 27161128 | 27161134 | 6 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 6193165 | 6193167 | 1 | OsKitaake06g081200  |
| Insertion | Chr7 | 5656390 | 5656393 | 2 | |
| Insertion | Chr11 | 1842027 | 1842030 | 2 | |
| Insertion | Chr12 | 11748170 | 11748175 | 4 | |
| Insertion | Chr2 | 13850924 | 13850926 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 9764620 | 9842329 | |
| Inversion | Chr5 | 16646662 | 16945641 | |
| Inversion | Chr5 | 16646672 | 16945642 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 8849094 | Chr1 | 33458450 | OsKitaake01g342500 |
| Translocation | Chr9 | 8849765 | Chr1 | 33458446 | OsKitaake01g342500 |
| Translocation | Chr9 | 8920927 | Chr4 | 34190685 | OsKitaake04g284954 |
| Translocation | Chr9 | 8978036 | Chr4 | 34190676 | OsKitaake04g284954 |
| Translocation | Chr7 | 9764608 | Chr4 | 14709106 |