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| Mutant Information |
|---|
| Mutant Name | FN491-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN491-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 28912421 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 5303448 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 11626995 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 29636002 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 10436498 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17298948 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 17298949 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 22553694 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 30596077 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 33761122 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3939838 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8491898 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 15150499 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21922123 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g127000 |
| SBS | Chr5 | 4718298 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17358210 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19762727 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8818443 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16161820 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16619832 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19024054 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 22137197 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 22596000 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25576576 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 18969110 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 19340034 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24900183 | G-A | Homo | INTRON | |
| SBS | Chr9 | 16383809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20590907 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14289996 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15432893 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 23467476 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 5898035 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17321246 | T-G | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2468456 | 2468457 | 1 | |
| Deletion | Chr4 | 7804001 | 8006000 | 201999 | 18 |
| Deletion | Chr8 | 8073238 | 8073240 | 2 | |
| Deletion | Chr12 | 9267988 | 9267990 | 2 | |
| Deletion | Chr3 | 16980639 | 16980642 | 3 | |
| Deletion | Chr2 | 16998774 | 16998781 | 7 | |
| Deletion | Chr3 | 17012001 | 17042000 | 29999 | 2 |
| Deletion | Chr3 | 17653676 | 17653685 | 9 | |
| Deletion | Chr10 | 19012004 | 19012006 | 2 | |
| Deletion | Chr3 | 19159556 | 19159564 | 8 | |
| Deletion | Chr8 | 20111418 | 20111420 | 2 | |
| Deletion | Chr1 | 21282001 | 21287000 | 4999 | |
| Deletion | Chr4 | 23412496 | 23412504 | 8 | |
| Deletion | Chr5 | 27076886 | 27076887 | 1 | |
| Deletion | Chr11 | 29477620 | 29477621 | 1 | |
| Deletion | Chr2 | 32648998 | 32648999 | 1 | OsKitaake02g334100 |
| Deletion | Chr2 | 35217259 | 35217260 | 1 | |
| Deletion | Chr2 | 35358695 | 35358705 | 10 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 10178668 | 10178671 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 10454587 | 10509041 | |
| Inversion | Chr3 | 17041922 | 17300016 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 18677528 | Chr5 | 27101378 | OsKitaake05g243800 |