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Mutant Information

Mutant Name	FN492-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN492-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3170163 G-A Hetero INTRON
SBS Chr1 3418379 G-A Hetero INTERGENIC
SBS Chr1 3748125 C-T Hetero INTERGENIC
SBS Chr1 35433311 T-A Hetero INTERGENIC
SBS Chr2 25858965 G-T Hetero INTERGENIC
SBS Chr2 33316135 C-T Hetero INTRON
SBS Chr3 19410292 C-A Hetero INTERGENIC
SBS Chr3 24628752 T-C Homo INTERGENIC
SBS Chr3 34248151 C-T Homo INTERGENIC
SBS Chr4 29107886 C-A Homo INTRON
SBS Chr5 142397 T-C Hetero INTERGENIC
SBS Chr5 6528084 T-C Homo INTERGENIC
SBS Chr5 29946379 T-A Hetero INTERGENIC
SBS Chr5 29946380 T-A Hetero INTERGENIC
SBS Chr7 26081498 G-A Hetero INTERGENIC
SBS Chr8 5793389 A-G Hetero INTERGENIC
SBS Chr8 18767364 C-A Homo UTR_5_PRIME
SBS Chr9 5052015 G-A Hetero INTERGENIC
SBS Chr9 10590498 A-C Hetero INTERGENIC
SBS Chr10 1520919 C-T Hetero INTERGENIC
SBS Chr11 19447657 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2661826 2661839 13
Deletion Chr1 7583865 7583869 4 OsKitaake01g095200
Deletion Chr3 9062243 9062244 1
Deletion Chr10 9983862 9983863 1
Deletion Chr9 14282365 14282367 2
Deletion Chr10 17406017 17406021 4
Deletion Chr5 21478159 21478170 11
Deletion Chr4 26224424 26224430 6
Deletion Chr3 32639442 32639443 1 OsKitaake03g345600
Deletion Chr3 33171475 33171477 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 35763581 35763584 2
Insertion Chr2 4098712 4098717 4
Insertion Chr8 10899757 10899760 2
Insertion Chr9 2193479 2193482 2
Insertion Chr12 23337000 23337003 2
Insertion Chr2 6961503 6961505 1
Insertion Chr7 12248929 12248931 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13622151 13787737 OsKitaake10g084200
Inversion Chr10 13622156 13787739 OsKitaake10g084200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 4611962 Chr3 24428926 OsKitaake07g057300
Translocation Chr7 4611972 Chr3 24427807 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3170163	G-A	Hetero	INTRON
SBS	Chr1	3418379	G-A	Hetero	INTERGENIC
SBS	Chr1	3748125	C-T	Hetero	INTERGENIC
SBS	Chr1	35433311	T-A	Hetero	INTERGENIC
SBS	Chr2	25858965	G-T	Hetero	INTERGENIC
SBS	Chr2	33316135	C-T	Hetero	INTRON
SBS	Chr3	19410292	C-A	Hetero	INTERGENIC
SBS	Chr3	24628752	T-C	Homo	INTERGENIC
SBS	Chr3	34248151	C-T	Homo	INTERGENIC
SBS	Chr4	29107886	C-A	Homo	INTRON
SBS	Chr5	142397	T-C	Hetero	INTERGENIC
SBS	Chr5	6528084	T-C	Homo	INTERGENIC
SBS	Chr5	29946379	T-A	Hetero	INTERGENIC
SBS	Chr5	29946380	T-A	Hetero	INTERGENIC
SBS	Chr7	26081498	G-A	Hetero	INTERGENIC
SBS	Chr8	5793389	A-G	Hetero	INTERGENIC
SBS	Chr8	18767364	C-A	Homo	UTR_5_PRIME
SBS	Chr9	5052015	G-A	Hetero	INTERGENIC
SBS	Chr9	10590498	A-C	Hetero	INTERGENIC
SBS	Chr10	1520919	C-T	Hetero	INTERGENIC
SBS	Chr11	19447657	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2661826	2661839	13
Deletion	Chr1	7583865	7583869	4	OsKitaake01g095200
Deletion	Chr3	9062243	9062244	1
Deletion	Chr10	9983862	9983863	1
Deletion	Chr9	14282365	14282367	2
Deletion	Chr10	17406017	17406021	4
Deletion	Chr5	21478159	21478170	11
Deletion	Chr4	26224424	26224430	6
Deletion	Chr3	32639442	32639443	1	OsKitaake03g345600
Deletion	Chr3	33171475	33171477	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13622151	13787737	OsKitaake10g084200
Inversion	Chr10	13622156	13787739	OsKitaake10g084200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes