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Mutant Information

Mutant Name	FN493-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN493-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1491136 A-C Homo INTERGENIC
SBS Chr2 10947299 T-A Hetero INTRON
SBS Chr2 10947300 G-A Hetero INTRON
SBS Chr3 13525183 G-T Hetero INTERGENIC
SBS Chr3 19223374 A-G Homo INTERGENIC
SBS Chr3 31970322 T-C Hetero INTERGENIC
SBS Chr4 9565183 C-T Hetero INTERGENIC
SBS Chr4 9565184 C-T Hetero INTERGENIC
SBS Chr4 22315115 G-A Homo INTERGENIC
SBS Chr4 23076914 T-A Homo INTERGENIC
SBS Chr5 7254690 C-T Hetero INTERGENIC
SBS Chr5 12002593 C-T Homo INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr8 5257743 G-A Hetero INTERGENIC
SBS Chr8 9945597 G-A Homo INTERGENIC
SBS Chr8 17277431 C-A Hetero INTERGENIC
SBS Chr8 21900069 C-T Homo INTERGENIC
SBS Chr9 4941964 C-T Hetero INTERGENIC
SBS Chr9 5776925 A-T Homo INTRON
SBS Chr9 14820421 T-A Hetero UTR_5_PRIME
SBS Chr10 18607716 C-T Hetero SPLICE_SITE_REGION
SBS Chr11 3334310 T-A Hetero INTERGENIC
SBS Chr11 4715514 C-T Hetero INTERGENIC
SBS Chr11 5348539 C-G Hetero INTERGENIC
SBS Chr11 20678876 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g162200
SBS Chr12 8047088 T-A Hetero INTERGENIC
SBS Chr12 12007260 C-T Hetero INTERGENIC
SBS Chr12 13436473 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g111400
SBS Chr12 13436474 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g111400

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr11 174589 174592 3
Deletion Chr1 7997571 7997573 2
Deletion Chr1 8008597 8008599 2
Deletion Chr4 8445099 8445100 1
Deletion Chr3 10809596 10809599 3
Deletion Chr12 11657933 11658552 619
Deletion Chr10 15186926 15186934 8
Deletion Chr6 15726083 15726089 6
Deletion Chr8 21877767 21877778 11
Deletion Chr8 24336105 24336113 8
Deletion Chr6 25941552 25941554 2
Deletion Chr8 26255278 26255284 6
Deletion Chr7 27791669 27791670 1
Deletion Chr1 28764885 28764889 4
Deletion Chr6 29267670 29267674 4
Deletion Chr4 34587112 34587124 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 318334 318337 2
Insertion Chr8 21461569 21461572 2
Insertion Chr8 24332921 24332923 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2421085 3157505 OsKitaake01g030100
Inversion Chr1 2421090 3157507 OsKitaake01g030100
Inversion Chr3 3180789 3204386 2
Inversion Chr8 22727348 22730181 OsKitaake08g174300
Inversion Chr8 22730183 23127193
Inversion Chr3 29725268 29760293 OsKitaake03g311100
Inversion Chr3 29725270 29773601 OsKitaake03g311300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1491136	A-C	Homo	INTERGENIC
SBS	Chr2	10947299	T-A	Hetero	INTRON
SBS	Chr2	10947300	G-A	Hetero	INTRON
SBS	Chr3	13525183	G-T	Hetero	INTERGENIC
SBS	Chr3	19223374	A-G	Homo	INTERGENIC
SBS	Chr3	31970322	T-C	Hetero	INTERGENIC
SBS	Chr4	9565183	C-T	Hetero	INTERGENIC
SBS	Chr4	9565184	C-T	Hetero	INTERGENIC
SBS	Chr4	22315115	G-A	Homo	INTERGENIC
SBS	Chr4	23076914	T-A	Homo	INTERGENIC
SBS	Chr5	7254690	C-T	Hetero	INTERGENIC
SBS	Chr5	12002593	C-T	Homo	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr8	5257743	G-A	Hetero	INTERGENIC
SBS	Chr8	9945597	G-A	Homo	INTERGENIC
SBS	Chr8	17277431	C-A	Hetero	INTERGENIC
SBS	Chr8	21900069	C-T	Homo	INTERGENIC
SBS	Chr9	4941964	C-T	Hetero	INTERGENIC
SBS	Chr9	5776925	A-T	Homo	INTRON
SBS	Chr9	14820421	T-A	Hetero	UTR_5_PRIME
SBS	Chr10	18607716	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr11	3334310	T-A	Hetero	INTERGENIC
SBS	Chr11	4715514	C-T	Hetero	INTERGENIC
SBS	Chr11	5348539	C-G	Hetero	INTERGENIC
SBS	Chr11	20678876	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g162200
SBS	Chr12	8047088	T-A	Hetero	INTERGENIC
SBS	Chr12	12007260	C-T	Hetero	INTERGENIC
SBS	Chr12	13436473	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g111400
SBS	Chr12	13436474	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g111400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr11	174589	174592	3
Deletion	Chr1	7997571	7997573	2
Deletion	Chr1	8008597	8008599	2
Deletion	Chr4	8445099	8445100	1
Deletion	Chr3	10809596	10809599	3
Deletion	Chr12	11657933	11658552	619
Deletion	Chr10	15186926	15186934	8
Deletion	Chr6	15726083	15726089	6
Deletion	Chr8	21877767	21877778	11
Deletion	Chr8	24336105	24336113	8
Deletion	Chr6	25941552	25941554	2
Deletion	Chr8	26255278	26255284	6
Deletion	Chr7	27791669	27791670	1
Deletion	Chr1	28764885	28764889	4
Deletion	Chr6	29267670	29267674	4
Deletion	Chr4	34587112	34587124	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2421085	3157505	OsKitaake01g030100
Inversion	Chr1	2421090	3157507	OsKitaake01g030100
Inversion	Chr3	3180789	3204386	2
Inversion	Chr8	22727348	22730181	OsKitaake08g174300
Inversion	Chr8	22730183	23127193
Inversion	Chr3	29725268	29760293	OsKitaake03g311100
Inversion	Chr3	29725270	29773601	OsKitaake03g311300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes