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Mutant Information

Mutant Name	FN494-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN494-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13930696 T-C Homo INTERGENIC
SBS Chr1 14951432 T-C Homo INTERGENIC
SBS Chr1 15570473 G-A Homo INTERGENIC
SBS Chr1 15571007 C-A Homo INTERGENIC
SBS Chr1 42435674 C-T Homo INTRON
SBS Chr2 900292 C-T Hetero INTRON
SBS Chr2 9717862 C-T Hetero INTERGENIC
SBS Chr2 16699840 C-T Hetero INTERGENIC
SBS Chr3 1066278 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g016700
SBS Chr3 22248733 G-C Hetero INTERGENIC
SBS Chr3 36052180 C-T Hetero INTERGENIC
SBS Chr4 11235799 T-A Hetero INTERGENIC
SBS Chr4 33703566 G-A Hetero INTRON
SBS Chr5 9746108 C-T Hetero INTERGENIC
SBS Chr5 23152707 G-A Hetero INTERGENIC
SBS Chr6 12095690 G-C Hetero INTERGENIC
SBS Chr6 14542692 C-T Homo INTERGENIC
SBS Chr6 22084673 T-G Homo INTERGENIC
SBS Chr6 25032532 G-T Hetero INTERGENIC
SBS Chr6 30578882 A-T Hetero INTERGENIC
SBS Chr7 26131615 G-A Homo INTERGENIC
SBS Chr8 4853 C-T Homo INTERGENIC
SBS Chr8 5439140 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 10268262 T-G Hetero INTERGENIC
SBS Chr8 13643292 G-T Hetero INTERGENIC
SBS Chr8 16982508 G-A Hetero INTERGENIC
SBS Chr8 26417554 C-A Hetero INTERGENIC
SBS Chr9 32918 G-T Hetero INTERGENIC
SBS Chr9 19557555 A-T Hetero INTERGENIC
SBS Chr10 7198899 T-A Hetero UTR_3_PRIME
SBS Chr11 10260152 G-C Homo INTERGENIC
SBS Chr11 10804561 C-G Homo INTERGENIC
SBS Chr12 15113583 T-C Hetero INTERGENIC
SBS Chr12 16770374 C-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 3092045 3092047 2
Deletion Chr6 3928362 3928364 2
Deletion Chr7 4971424 4971439 15
Deletion Chr4 6228437 6228439 2
Deletion Chr12 8399001 8416000 16999 2
Deletion Chr6 8950217 8950226 9
Deletion Chr4 9744805 9744808 3
Deletion Chr3 11487325 11487331 6
Deletion Chr9 19230297 19230298 1
Deletion Chr6 19963419 19963432 13
Deletion Chr7 25033580 25033587 7
Deletion Chr11 26606984 26606991 7
Deletion Chr7 27070849 27070871 22
Deletion Chr4 27157001 27157007 6
Deletion Chr11 28896924 28896991 67
Deletion Chr5 30165667 30165668 1
Deletion Chr1 36456676 36456682 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 3803025 3803028 2
Insertion Chr3 19362193 19362195 1
Insertion Chr5 13240544 13240547 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4022977 Chr1 42355240
Translocation Chr3 4023081 Chr1 42355254
Translocation Chr8 10384862 Chr3 8226784 2
Translocation Chr6 10631287 Chr2 29512574 OsKitaake06g119501
Translocation Chr6 10631587 Chr2 29512547 OsKitaake06g119501

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13930696	T-C	Homo	INTERGENIC
SBS	Chr1	14951432	T-C	Homo	INTERGENIC
SBS	Chr1	15570473	G-A	Homo	INTERGENIC
SBS	Chr1	15571007	C-A	Homo	INTERGENIC
SBS	Chr1	42435674	C-T	Homo	INTRON
SBS	Chr2	900292	C-T	Hetero	INTRON
SBS	Chr2	9717862	C-T	Hetero	INTERGENIC
SBS	Chr2	16699840	C-T	Hetero	INTERGENIC
SBS	Chr3	1066278	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g016700
SBS	Chr3	22248733	G-C	Hetero	INTERGENIC
SBS	Chr3	36052180	C-T	Hetero	INTERGENIC
SBS	Chr4	11235799	T-A	Hetero	INTERGENIC
SBS	Chr4	33703566	G-A	Hetero	INTRON
SBS	Chr5	9746108	C-T	Hetero	INTERGENIC
SBS	Chr5	23152707	G-A	Hetero	INTERGENIC
SBS	Chr6	12095690	G-C	Hetero	INTERGENIC
SBS	Chr6	14542692	C-T	Homo	INTERGENIC
SBS	Chr6	22084673	T-G	Homo	INTERGENIC
SBS	Chr6	25032532	G-T	Hetero	INTERGENIC
SBS	Chr6	30578882	A-T	Hetero	INTERGENIC
SBS	Chr7	26131615	G-A	Homo	INTERGENIC
SBS	Chr8	4853	C-T	Homo	INTERGENIC
SBS	Chr8	5439140	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	10268262	T-G	Hetero	INTERGENIC
SBS	Chr8	13643292	G-T	Hetero	INTERGENIC
SBS	Chr8	16982508	G-A	Hetero	INTERGENIC
SBS	Chr8	26417554	C-A	Hetero	INTERGENIC
SBS	Chr9	32918	G-T	Hetero	INTERGENIC
SBS	Chr9	19557555	A-T	Hetero	INTERGENIC
SBS	Chr10	7198899	T-A	Hetero	UTR_3_PRIME
SBS	Chr11	10260152	G-C	Homo	INTERGENIC
SBS	Chr11	10804561	C-G	Homo	INTERGENIC
SBS	Chr12	15113583	T-C	Hetero	INTERGENIC
SBS	Chr12	16770374	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	3092045	3092047	2
Deletion	Chr6	3928362	3928364	2
Deletion	Chr7	4971424	4971439	15
Deletion	Chr4	6228437	6228439	2
Deletion	Chr12	8399001	8416000	16999	2
Deletion	Chr6	8950217	8950226	9
Deletion	Chr4	9744805	9744808	3
Deletion	Chr3	11487325	11487331	6
Deletion	Chr9	19230297	19230298	1
Deletion	Chr6	19963419	19963432	13
Deletion	Chr7	25033580	25033587	7
Deletion	Chr11	26606984	26606991	7
Deletion	Chr7	27070849	27070871	22
Deletion	Chr4	27157001	27157007	6
Deletion	Chr11	28896924	28896991	67
Deletion	Chr5	30165667	30165668	1
Deletion	Chr1	36456676	36456682	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4022977	Chr1	42355240
Translocation	Chr3	4023081	Chr1	42355254
Translocation	Chr8	10384862	Chr3	8226784	2
Translocation	Chr6	10631287	Chr2	29512574	OsKitaake06g119501
Translocation	Chr6	10631587	Chr2	29512547	OsKitaake06g119501

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes