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Mutant Information

Mutant Name	FN495-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN495-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 748889 G-A Homo INTRON
SBS Chr1 11013212 C-T Hetero INTERGENIC
SBS Chr1 15503929 C-A Hetero INTRON
SBS Chr1 33807398 T-C Homo INTERGENIC
SBS Chr1 34246466 G-T Homo INTERGENIC
SBS Chr2 22007145 C-A Hetero INTERGENIC
SBS Chr2 26208906 A-G Hetero INTERGENIC
SBS Chr2 28508178 A-G Hetero INTERGENIC
SBS Chr2 31230975 C-T Hetero INTERGENIC
SBS Chr3 18354712 A-T Hetero INTERGENIC
SBS Chr4 16382858 G-A Hetero INTERGENIC
SBS Chr4 17251968 C-T Hetero INTRON
SBS Chr4 35630952 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g304200
SBS Chr5 11069432 T-C Homo INTERGENIC
SBS Chr6 534139 C-T Hetero INTRON
SBS Chr8 7244730 T-C Hetero INTERGENIC
SBS Chr8 16277718 C-G Hetero INTERGENIC
SBS Chr8 16750641 G-A Hetero INTERGENIC
SBS Chr9 7707857 G-A Homo INTERGENIC
SBS Chr9 8676836 A-T Hetero INTERGENIC
SBS Chr9 20112408 T-A Hetero INTERGENIC
SBS Chr9 20985478 T-G Hetero INTERGENIC
SBS Chr10 3714829 G-C Hetero INTERGENIC
SBS Chr10 6607728 C-T Hetero INTERGENIC
SBS Chr10 14254796 G-A Hetero INTERGENIC
SBS Chr10 21853598 A-T Hetero INTERGENIC
SBS Chr11 5218284 A-T Homo INTERGENIC
SBS Chr11 15243634 C-A Homo INTERGENIC
SBS Chr11 28368529 G-A Homo INTERGENIC
SBS Chr12 20941271 G-T Homo INTRON
SBS Chr12 21779264 T-G Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4580525 4580527 2
Deletion Chr7 5040596 5040601 5 OsKitaake07g061400
Deletion Chr6 5888101 5888105 4
Deletion Chr3 7983298 7983299 1
Deletion Chr4 8214361 8214364 3
Deletion Chr12 11719649 11719804 155
Deletion Chr12 11869630 11869636 6
Deletion Chr5 19027981 19027985 4
Deletion Chr11 20756687 20756697 10
Deletion Chr8 23032796 23032798 2
Deletion Chr5 25568289 25568297 8
Deletion Chr12 25739708 25739711 3
Deletion Chr2 30016796 30016797 1
Deletion Chr4 31329203 31329207 4
Deletion Chr2 32784806 32784807 1
Deletion Chr4 36842081 36842085 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22096588 22096593 4
Insertion Chr1 34919097 34919100 2
Insertion Chr11 24174031 24174033 1
Insertion Chr2 28849671 28849673 1
Insertion Chr3 4089589 4089591 1
Insertion Chr3 19007812 19007815 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 23049173 23452848 OsKitaake06g203400
Inversion Chr6 23049175 23452851 OsKitaake06g203400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	748889	G-A	Homo	INTRON
SBS	Chr1	11013212	C-T	Hetero	INTERGENIC
SBS	Chr1	15503929	C-A	Hetero	INTRON
SBS	Chr1	33807398	T-C	Homo	INTERGENIC
SBS	Chr1	34246466	G-T	Homo	INTERGENIC
SBS	Chr2	22007145	C-A	Hetero	INTERGENIC
SBS	Chr2	26208906	A-G	Hetero	INTERGENIC
SBS	Chr2	28508178	A-G	Hetero	INTERGENIC
SBS	Chr2	31230975	C-T	Hetero	INTERGENIC
SBS	Chr3	18354712	A-T	Hetero	INTERGENIC
SBS	Chr4	16382858	G-A	Hetero	INTERGENIC
SBS	Chr4	17251968	C-T	Hetero	INTRON
SBS	Chr4	35630952	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g304200
SBS	Chr5	11069432	T-C	Homo	INTERGENIC
SBS	Chr6	534139	C-T	Hetero	INTRON
SBS	Chr8	7244730	T-C	Hetero	INTERGENIC
SBS	Chr8	16277718	C-G	Hetero	INTERGENIC
SBS	Chr8	16750641	G-A	Hetero	INTERGENIC
SBS	Chr9	7707857	G-A	Homo	INTERGENIC
SBS	Chr9	8676836	A-T	Hetero	INTERGENIC
SBS	Chr9	20112408	T-A	Hetero	INTERGENIC
SBS	Chr9	20985478	T-G	Hetero	INTERGENIC
SBS	Chr10	3714829	G-C	Hetero	INTERGENIC
SBS	Chr10	6607728	C-T	Hetero	INTERGENIC
SBS	Chr10	14254796	G-A	Hetero	INTERGENIC
SBS	Chr10	21853598	A-T	Hetero	INTERGENIC
SBS	Chr11	5218284	A-T	Homo	INTERGENIC
SBS	Chr11	15243634	C-A	Homo	INTERGENIC
SBS	Chr11	28368529	G-A	Homo	INTERGENIC
SBS	Chr12	20941271	G-T	Homo	INTRON
SBS	Chr12	21779264	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4580525	4580527	2
Deletion	Chr7	5040596	5040601	5	OsKitaake07g061400
Deletion	Chr6	5888101	5888105	4
Deletion	Chr3	7983298	7983299	1
Deletion	Chr4	8214361	8214364	3
Deletion	Chr12	11719649	11719804	155
Deletion	Chr12	11869630	11869636	6
Deletion	Chr5	19027981	19027985	4
Deletion	Chr11	20756687	20756697	10
Deletion	Chr8	23032796	23032798	2
Deletion	Chr5	25568289	25568297	8
Deletion	Chr12	25739708	25739711	3
Deletion	Chr2	30016796	30016797	1
Deletion	Chr4	31329203	31329207	4
Deletion	Chr2	32784806	32784807	1
Deletion	Chr4	36842081	36842085	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	23049173	23452848	OsKitaake06g203400
Inversion	Chr6	23049175	23452851	OsKitaake06g203400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes