Search Kitaake

Mutant Information

Mutant Name	FN496-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN496-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 15626291 C-A Homo INTERGENIC
SBS Chr2 19958710 G-A Hetero UTR_5_PRIME
SBS Chr2 25667913 C-T Homo INTERGENIC
SBS Chr2 32750584 C-T Hetero INTERGENIC
SBS Chr3 777623 G-A Hetero STOP_GAINED OsKitaake03g012200
SBS Chr3 24645352 G-A Hetero INTERGENIC
SBS Chr3 33339750 C-T Hetero INTERGENIC
SBS Chr4 24593207 G-A Homo INTERGENIC
SBS Chr5 44616 A-T Homo NON_SYNONYMOUS_CODING OsKitaake05g000400
SBS Chr5 4819084 G-A Homo INTERGENIC
SBS Chr5 7427664 G-A Homo INTERGENIC
SBS Chr5 11748011 G-C Homo INTERGENIC
SBS Chr5 22808869 A-T Hetero INTERGENIC
SBS Chr6 1626410 C-T Homo INTRON
SBS Chr7 26917594 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g250800
SBS Chr8 2381336 G-C Hetero INTERGENIC
SBS Chr8 17938322 C-T Hetero INTERGENIC
SBS Chr8 27930267 T-A Hetero UTR_3_PRIME
SBS Chr10 12013156 C-T Homo INTERGENIC
SBS Chr11 669987 G-A Hetero INTRON
SBS Chr11 7353098 G-T Hetero INTERGENIC
SBS Chr11 7653713 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 8966386 C-G Hetero INTERGENIC
SBS Chr11 12503706 A-G Hetero INTERGENIC
SBS Chr11 17908511 T-C Hetero INTRON
SBS Chr12 12514323 T-G Homo INTERGENIC
SBS Chr12 15180829 G-C Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2346633 2346638 5
Deletion Chr2 3200001 3327000 126999 27
Deletion Chr2 3332001 3380000 47999 6
Deletion Chr4 3402859 3402861 2
Deletion Chr4 7054908 7054914 6
Deletion Chr6 7694319 7694324 5
Deletion Chr7 8335719 8335721 2
Deletion Chr6 11837385 11837391 6
Deletion Chr4 11945010 11945011 1
Deletion Chr10 12577558 12577567 9
Deletion Chr2 13094657 13094730 73
Deletion Chr8 15510257 15510259 2
Deletion Chr4 17526720 17526721 1
Deletion Chr9 19740879 19740885 6
Deletion Chr10 20005222 20005224 2
Deletion Chr9 21060780 21060784 4
Deletion Chr7 21396974 21396982 8
Deletion Chr10 22017251 22017271 20
Deletion Chr4 23235956 23235967 11
Deletion Chr6 24637001 24667000 29999 4
Deletion Chr4 27039094 27039115 21
Deletion Chr1 31642429 31642430 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 26602184 26602186 1
Insertion Chr12 24968209 24968212 2
Insertion Chr5 30226856 30226864 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	15626291	C-A	Homo	INTERGENIC
SBS	Chr2	19958710	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	25667913	C-T	Homo	INTERGENIC
SBS	Chr2	32750584	C-T	Hetero	INTERGENIC
SBS	Chr3	777623	G-A	Hetero	STOP_GAINED	OsKitaake03g012200
SBS	Chr3	24645352	G-A	Hetero	INTERGENIC
SBS	Chr3	33339750	C-T	Hetero	INTERGENIC
SBS	Chr4	24593207	G-A	Homo	INTERGENIC
SBS	Chr5	44616	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g000400
SBS	Chr5	4819084	G-A	Homo	INTERGENIC
SBS	Chr5	7427664	G-A	Homo	INTERGENIC
SBS	Chr5	11748011	G-C	Homo	INTERGENIC
SBS	Chr5	22808869	A-T	Hetero	INTERGENIC
SBS	Chr6	1626410	C-T	Homo	INTRON
SBS	Chr7	26917594	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g250800
SBS	Chr8	2381336	G-C	Hetero	INTERGENIC
SBS	Chr8	17938322	C-T	Hetero	INTERGENIC
SBS	Chr8	27930267	T-A	Hetero	UTR_3_PRIME
SBS	Chr10	12013156	C-T	Homo	INTERGENIC
SBS	Chr11	669987	G-A	Hetero	INTRON
SBS	Chr11	7353098	G-T	Hetero	INTERGENIC
SBS	Chr11	7653713	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	8966386	C-G	Hetero	INTERGENIC
SBS	Chr11	12503706	A-G	Hetero	INTERGENIC
SBS	Chr11	17908511	T-C	Hetero	INTRON
SBS	Chr12	12514323	T-G	Homo	INTERGENIC
SBS	Chr12	15180829	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2346633	2346638	5
Deletion	Chr2	3200001	3327000	126999	27
Deletion	Chr2	3332001	3380000	47999	6
Deletion	Chr4	3402859	3402861	2
Deletion	Chr4	7054908	7054914	6
Deletion	Chr6	7694319	7694324	5
Deletion	Chr7	8335719	8335721	2
Deletion	Chr6	11837385	11837391	6
Deletion	Chr4	11945010	11945011	1
Deletion	Chr10	12577558	12577567	9
Deletion	Chr2	13094657	13094730	73
Deletion	Chr8	15510257	15510259	2
Deletion	Chr4	17526720	17526721	1
Deletion	Chr9	19740879	19740885	6
Deletion	Chr10	20005222	20005224	2
Deletion	Chr9	21060780	21060784	4
Deletion	Chr7	21396974	21396982	8
Deletion	Chr10	22017251	22017271	20
Deletion	Chr4	23235956	23235967	11
Deletion	Chr6	24637001	24667000	29999	4
Deletion	Chr4	27039094	27039115	21
Deletion	Chr1	31642429	31642430	1

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes