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Mutant Information

Mutant Name	FN497-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN497-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6021526 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g076900
SBS Chr1 7039819 A-T Homo INTERGENIC
SBS Chr1 12661428 C-T Homo INTERGENIC
SBS Chr1 19151712 T-C Hetero INTERGENIC
SBS Chr2 24734961 T-A Homo INTRON
SBS Chr2 24986113 C-T Hetero INTERGENIC
SBS Chr4 1788359 C-T Hetero INTERGENIC
SBS Chr4 7620226 T-C Hetero INTERGENIC
SBS Chr4 10237104 C-T Hetero INTERGENIC
SBS Chr4 17191900 A-C Hetero INTERGENIC
SBS Chr4 17191907 T-G Hetero INTERGENIC
SBS Chr4 24549603 G-T Homo INTERGENIC
SBS Chr5 4933530 C-T Hetero INTERGENIC
SBS Chr5 20579487 G-A Hetero INTERGENIC
SBS Chr6 85765 A-G Hetero INTERGENIC
SBS Chr6 759484 A-T Homo INTERGENIC
SBS Chr6 10844866 C-T Hetero INTERGENIC
SBS Chr7 2566125 G-A Hetero INTERGENIC
SBS Chr7 5376781 C-T Hetero INTERGENIC
SBS Chr7 9126171 G-A Hetero INTERGENIC
SBS Chr7 11368082 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g106200
SBS Chr8 1307459 C-T Homo INTERGENIC
SBS Chr8 2577412 C-T Homo INTERGENIC
SBS Chr8 5580911 T-A Hetero INTERGENIC
SBS Chr8 5580912 A-C Hetero INTERGENIC
SBS Chr8 7682834 T-A Hetero INTERGENIC
SBS Chr8 7682835 C-T Hetero INTERGENIC
SBS Chr8 19255862 A-G Homo INTERGENIC
SBS Chr8 25184630 A-G Homo INTERGENIC
SBS Chr8 26145245 A-G Homo INTERGENIC
SBS Chr9 367876 G-A Hetero INTERGENIC
SBS Chr9 7060859 T-C Homo INTERGENIC
SBS Chr9 9017240 C-T Homo INTERGENIC
SBS Chr10 4600264 G-T Hetero INTERGENIC
SBS Chr10 8805914 T-A Hetero INTERGENIC
SBS Chr10 11017741 T-C Hetero INTRON
SBS Chr10 17105566 A-G Hetero INTRON
SBS Chr10 23178332 C-A Homo INTERGENIC
SBS Chr11 2915915 G-A Hetero UTR_5_PRIME
SBS Chr11 9522747 C-T Hetero INTERGENIC
SBS Chr11 20750203 A-G Hetero INTRON
SBS Chr11 25243460 C-T Hetero INTERGENIC
SBS Chr12 7773705 C-T Hetero INTERGENIC
SBS Chr12 23380306 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g187300

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20796 20797 1
Deletion Chr6 12643066 12643067 1
Deletion Chr3 18676394 18676396 2
Deletion Chr3 19127433 19127440 7
Deletion Chr4 24543402 24543404 2
Deletion Chr7 24923001 24936000 12999 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6260186 6260190 3
Insertion Chr2 10173351 10173354 2
Insertion Chr8 19374734 19374737 2
Insertion Chr10 21004215 21004218 2
Insertion Chr5 29939081 29939084 2
Insertion Chr9 14992284 14992286 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 1811977 1848861 OsKitaake01g021500
Inversion Chr1 1811986 1848879 OsKitaake01g021500
Inversion Chr10 13640478 13754808 OsKitaake10g082500
Inversion Chr10 13640488 13754814 OsKitaake10g082500
Inversion Chr8 21047009 21329818
Inversion Chr8 21047011 21329820
Inversion Chr7 24794276 25373035 OsKitaake07g229900
Inversion Chr7 24923926 25366910 2

Translocations: 13

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7387387 Chr7 25366911 2
Translocation Chr10 9583829 Chr7 24924312 2
Translocation Chr10 9583836 Chr7 24934959 2
Translocation Chr10 14541565 Chr6 28689362 2
Translocation Chr10 14541607 Chr6 28688219 2
Translocation Chr7 24268637 Chr3 6211527
Translocation Chr7 24268890 Chr3 6209916
Translocation Chr7 24268894 Chr1 4899317
Translocation Chr7 24923939 Chr2 17637682 2
Translocation Chr7 24934969 Chr2 17637682 2
Translocation Chr7 24935717 Chr2 17637677 2
Translocation Chr6 25509817 Chr5 23980998 OsKitaake06g226500
Translocation Chr6 25509844 Chr5 23979284 OsKitaake06g226500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6021526	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g076900
SBS	Chr1	7039819	A-T	Homo	INTERGENIC
SBS	Chr1	12661428	C-T	Homo	INTERGENIC
SBS	Chr1	19151712	T-C	Hetero	INTERGENIC
SBS	Chr2	24734961	T-A	Homo	INTRON
SBS	Chr2	24986113	C-T	Hetero	INTERGENIC
SBS	Chr4	1788359	C-T	Hetero	INTERGENIC
SBS	Chr4	7620226	T-C	Hetero	INTERGENIC
SBS	Chr4	10237104	C-T	Hetero	INTERGENIC
SBS	Chr4	17191900	A-C	Hetero	INTERGENIC
SBS	Chr4	17191907	T-G	Hetero	INTERGENIC
SBS	Chr4	24549603	G-T	Homo	INTERGENIC
SBS	Chr5	4933530	C-T	Hetero	INTERGENIC
SBS	Chr5	20579487	G-A	Hetero	INTERGENIC
SBS	Chr6	85765	A-G	Hetero	INTERGENIC
SBS	Chr6	759484	A-T	Homo	INTERGENIC
SBS	Chr6	10844866	C-T	Hetero	INTERGENIC
SBS	Chr7	2566125	G-A	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Hetero	INTERGENIC
SBS	Chr7	9126171	G-A	Hetero	INTERGENIC
SBS	Chr7	11368082	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g106200
SBS	Chr8	1307459	C-T	Homo	INTERGENIC
SBS	Chr8	2577412	C-T	Homo	INTERGENIC
SBS	Chr8	5580911	T-A	Hetero	INTERGENIC
SBS	Chr8	5580912	A-C	Hetero	INTERGENIC
SBS	Chr8	7682834	T-A	Hetero	INTERGENIC
SBS	Chr8	7682835	C-T	Hetero	INTERGENIC
SBS	Chr8	19255862	A-G	Homo	INTERGENIC
SBS	Chr8	25184630	A-G	Homo	INTERGENIC
SBS	Chr8	26145245	A-G	Homo	INTERGENIC
SBS	Chr9	367876	G-A	Hetero	INTERGENIC
SBS	Chr9	7060859	T-C	Homo	INTERGENIC
SBS	Chr9	9017240	C-T	Homo	INTERGENIC
SBS	Chr10	4600264	G-T	Hetero	INTERGENIC
SBS	Chr10	8805914	T-A	Hetero	INTERGENIC
SBS	Chr10	11017741	T-C	Hetero	INTRON
SBS	Chr10	17105566	A-G	Hetero	INTRON
SBS	Chr10	23178332	C-A	Homo	INTERGENIC
SBS	Chr11	2915915	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	9522747	C-T	Hetero	INTERGENIC
SBS	Chr11	20750203	A-G	Hetero	INTRON
SBS	Chr11	25243460	C-T	Hetero	INTERGENIC
SBS	Chr12	7773705	C-T	Hetero	INTERGENIC
SBS	Chr12	23380306	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g187300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20796	20797	1
Deletion	Chr6	12643066	12643067	1
Deletion	Chr3	18676394	18676396	2
Deletion	Chr3	19127433	19127440	7
Deletion	Chr4	24543402	24543404	2
Deletion	Chr7	24923001	24936000	12999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1811977	1848861	OsKitaake01g021500
Inversion	Chr1	1811986	1848879	OsKitaake01g021500
Inversion	Chr10	13640478	13754808	OsKitaake10g082500
Inversion	Chr10	13640488	13754814	OsKitaake10g082500
Inversion	Chr8	21047009	21329818
Inversion	Chr8	21047011	21329820
Inversion	Chr7	24794276	25373035	OsKitaake07g229900
Inversion	Chr7	24923926	25366910	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes