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Mutant Information

Mutant Name	FN499-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN499-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32211521 A-T Homo INTRON
SBS Chr1 33544167 C-T Homo INTERGENIC
SBS Chr1 37590861 C-T Homo INTERGENIC
SBS Chr1 38824099 A-G Homo INTERGENIC
SBS Chr2 13482738 G-T Homo INTRON
SBS Chr2 13482739 G-T Homo INTRON
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 34322224 A-T Homo INTRON
SBS Chr3 591567 T-C Hetero INTERGENIC
SBS Chr3 1046520 G-A Hetero INTERGENIC
SBS Chr3 7303557 G-A Hetero INTERGENIC
SBS Chr3 13944834 G-A Hetero INTERGENIC
SBS Chr3 19204555 G-A Homo INTERGENIC
SBS Chr3 22494221 A-C Homo INTERGENIC
SBS Chr3 26649753 C-T Homo INTERGENIC
SBS Chr4 7453572 C-T Hetero INTERGENIC
SBS Chr4 13519390 C-T Hetero INTERGENIC
SBS Chr4 23748543 C-T Homo INTERGENIC
SBS Chr5 13691929 G-A Homo INTERGENIC
SBS Chr5 24321618 A-G Homo INTERGENIC
SBS Chr6 13567840 A-T Hetero UTR_3_PRIME
SBS Chr6 24120496 C-T Homo UTR_3_PRIME
SBS Chr6 29620124 A-C Homo INTRON
SBS Chr7 11439964 G-A Homo INTERGENIC
SBS Chr7 14175018 G-A Hetero INTERGENIC
SBS Chr7 14592761 G-T Homo INTERGENIC
SBS Chr7 17967972 C-T Homo INTERGENIC
SBS Chr7 17967974 C-T Homo INTERGENIC
SBS Chr7 21712148 A-G Homo INTERGENIC
SBS Chr8 8618183 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g079000
SBS Chr8 8618184 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g079000
SBS Chr8 11366048 G-T Homo INTERGENIC
SBS Chr8 18831133 C-T Homo INTERGENIC
SBS Chr9 4083424 G-A Homo INTERGENIC
SBS Chr9 17781371 T-C Hetero INTRON
SBS Chr9 22169282 C-T Hetero INTRON
SBS Chr10 238066 G-A Hetero INTRON
SBS Chr10 13354424 C-T Homo INTERGENIC
SBS Chr10 18384969 C-T Homo INTERGENIC
SBS Chr10 20048081 C-G Homo INTERGENIC
SBS Chr11 15844115 G-A Homo INTRON
SBS Chr12 8550371 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1485718 1486109 391
Deletion Chr2 2294363 2294370 7
Deletion Chr12 2926382 2926387 5 OsKitaake12g043500
Deletion Chr2 5476920 5476930 10
Deletion Chr12 6208582 6208590 8
Deletion Chr2 13486551 13486556 5
Deletion Chr12 14538748 14538750 2
Deletion Chr1 17242104 17242106 2
Deletion Chr3 21457554 21457562 8
Deletion Chr7 21712158 21712159 1
Deletion Chr10 23539072 23539074 2
Deletion Chr6 24857905 24857913 8
Deletion Chr5 25752024 25752037 13 OsKitaake05g226200
Deletion Chr3 26898319 26898321 2
Deletion Chr8 27988625 27988637 12
Deletion Chr11 28132866 28132867 1
Deletion Chr2 28428139 28428144 5 OsKitaake02g286300

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10343054 10343057 2
Insertion Chr7 10157189 10157192 2
Insertion Chr7 19252260 19252263 2
Insertion Chr9 12736075 12736078 2
Insertion Chr12 17628256 17628259 2
Insertion Chr12 25394515 25394519 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 35885771 36314923
Inversion Chr2 35885780 36314927

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32211521	A-T	Homo	INTRON
SBS	Chr1	33544167	C-T	Homo	INTERGENIC
SBS	Chr1	37590861	C-T	Homo	INTERGENIC
SBS	Chr1	38824099	A-G	Homo	INTERGENIC
SBS	Chr2	13482738	G-T	Homo	INTRON
SBS	Chr2	13482739	G-T	Homo	INTRON
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	34322224	A-T	Homo	INTRON
SBS	Chr3	591567	T-C	Hetero	INTERGENIC
SBS	Chr3	1046520	G-A	Hetero	INTERGENIC
SBS	Chr3	7303557	G-A	Hetero	INTERGENIC
SBS	Chr3	13944834	G-A	Hetero	INTERGENIC
SBS	Chr3	19204555	G-A	Homo	INTERGENIC
SBS	Chr3	22494221	A-C	Homo	INTERGENIC
SBS	Chr3	26649753	C-T	Homo	INTERGENIC
SBS	Chr4	7453572	C-T	Hetero	INTERGENIC
SBS	Chr4	13519390	C-T	Hetero	INTERGENIC
SBS	Chr4	23748543	C-T	Homo	INTERGENIC
SBS	Chr5	13691929	G-A	Homo	INTERGENIC
SBS	Chr5	24321618	A-G	Homo	INTERGENIC
SBS	Chr6	13567840	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	24120496	C-T	Homo	UTR_3_PRIME
SBS	Chr6	29620124	A-C	Homo	INTRON
SBS	Chr7	11439964	G-A	Homo	INTERGENIC
SBS	Chr7	14175018	G-A	Hetero	INTERGENIC
SBS	Chr7	14592761	G-T	Homo	INTERGENIC
SBS	Chr7	17967972	C-T	Homo	INTERGENIC
SBS	Chr7	17967974	C-T	Homo	INTERGENIC
SBS	Chr7	21712148	A-G	Homo	INTERGENIC
SBS	Chr8	8618183	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g079000
SBS	Chr8	8618184	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g079000
SBS	Chr8	11366048	G-T	Homo	INTERGENIC
SBS	Chr8	18831133	C-T	Homo	INTERGENIC
SBS	Chr9	4083424	G-A	Homo	INTERGENIC
SBS	Chr9	17781371	T-C	Hetero	INTRON
SBS	Chr9	22169282	C-T	Hetero	INTRON
SBS	Chr10	238066	G-A	Hetero	INTRON
SBS	Chr10	13354424	C-T	Homo	INTERGENIC
SBS	Chr10	18384969	C-T	Homo	INTERGENIC
SBS	Chr10	20048081	C-G	Homo	INTERGENIC
SBS	Chr11	15844115	G-A	Homo	INTRON
SBS	Chr12	8550371	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1485718	1486109	391
Deletion	Chr2	2294363	2294370	7
Deletion	Chr12	2926382	2926387	5	OsKitaake12g043500
Deletion	Chr2	5476920	5476930	10
Deletion	Chr12	6208582	6208590	8
Deletion	Chr2	13486551	13486556	5
Deletion	Chr12	14538748	14538750	2
Deletion	Chr1	17242104	17242106	2
Deletion	Chr3	21457554	21457562	8
Deletion	Chr7	21712158	21712159	1
Deletion	Chr10	23539072	23539074	2
Deletion	Chr6	24857905	24857913	8
Deletion	Chr5	25752024	25752037	13	OsKitaake05g226200
Deletion	Chr3	26898319	26898321	2
Deletion	Chr8	27988625	27988637	12
Deletion	Chr11	28132866	28132867	1
Deletion	Chr2	28428139	28428144	5	OsKitaake02g286300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	35885771	36314923
Inversion	Chr2	35885780	36314927

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes