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Mutant Information

Mutant Name	FN500-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN500-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10371559 A-G Homo UTR_3_PRIME
SBS Chr1 20939959 T-C Hetero INTERGENIC
SBS Chr1 36978580 C-A Hetero INTERGENIC
SBS Chr3 24666481 A-G Homo INTERGENIC
SBS Chr4 1658251 G-A Homo INTERGENIC
SBS Chr4 5621867 A-T Homo INTERGENIC
SBS Chr4 17253340 A-G Homo INTRON
SBS Chr4 32447315 C-T Hetero INTRON
SBS Chr5 4739573 C-T Hetero INTERGENIC
SBS Chr5 8591596 G-A Hetero INTERGENIC
SBS Chr5 12807227 C-T Hetero INTERGENIC
SBS Chr5 19103536 T-G Homo SYNONYMOUS_CODING
SBS Chr5 21728436 T-C Hetero INTERGENIC
SBS Chr5 26556192 T-A Hetero INTRON
SBS Chr6 15922431 G-T Homo INTERGENIC
SBS Chr6 24842871 G-A Hetero INTERGENIC
SBS Chr7 1409422 G-A Hetero INTRON
SBS Chr7 4244600 T-C Hetero INTRON
SBS Chr7 5780300 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g070500
SBS Chr8 2090376 G-A Homo INTRON
SBS Chr8 12773745 G-A Hetero INTERGENIC
SBS Chr8 27257026 C-T Hetero INTERGENIC
SBS Chr9 4935176 G-T Hetero INTRON
SBS Chr9 4935177 A-T Hetero INTRON
SBS Chr9 8175800 G-A Hetero INTERGENIC
SBS Chr9 20521223 G-T Homo INTERGENIC
SBS Chr9 22692267 C-G Homo INTERGENIC
SBS Chr9 22707854 T-C Homo INTERGENIC
SBS Chr10 3140361 C-G Homo INTERGENIC
SBS Chr10 18310436 A-T Homo UTR_5_PRIME
SBS Chr10 18910761 G-A Hetero INTERGENIC
SBS Chr11 6708150 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g079600
SBS Chr11 8344785 G-A Hetero INTERGENIC
SBS Chr11 8606609 G-A Hetero INTERGENIC
SBS Chr11 29356377 T-C Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 552912 552913 1
Deletion Chr5 12394221 12394224 3
Deletion Chr1 13467362 13467364 2
Deletion Chr4 15223611 15223614 3 OsKitaake04g073100
Deletion Chr9 16912451 16912520 69
Deletion Chr5 17861487 17861493 6
Deletion Chr10 19212118 19212121 3
Deletion Chr9 20218555 20218563 8
Deletion Chr7 21508306 21508316 10
Deletion Chr3 28741665 28741667 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20811901 20811904 2
Insertion Chr2 11405891 11405894 2
Insertion Chr3 24265565 24265568 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 15299884 Chr1 1514334
Translocation Chr10 18900979 Chr8 22925857 OsKitaake10g134900
Translocation Chr10 18901789 Chr8 22925849 OsKitaake10g134900
Translocation Chr9 22715153 Chr7 25761544 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10371559	A-G	Homo	UTR_3_PRIME
SBS	Chr1	20939959	T-C	Hetero	INTERGENIC
SBS	Chr1	36978580	C-A	Hetero	INTERGENIC
SBS	Chr3	24666481	A-G	Homo	INTERGENIC
SBS	Chr4	1658251	G-A	Homo	INTERGENIC
SBS	Chr4	5621867	A-T	Homo	INTERGENIC
SBS	Chr4	17253340	A-G	Homo	INTRON
SBS	Chr4	32447315	C-T	Hetero	INTRON
SBS	Chr5	4739573	C-T	Hetero	INTERGENIC
SBS	Chr5	8591596	G-A	Hetero	INTERGENIC
SBS	Chr5	12807227	C-T	Hetero	INTERGENIC
SBS	Chr5	19103536	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	21728436	T-C	Hetero	INTERGENIC
SBS	Chr5	26556192	T-A	Hetero	INTRON
SBS	Chr6	15922431	G-T	Homo	INTERGENIC
SBS	Chr6	24842871	G-A	Hetero	INTERGENIC
SBS	Chr7	1409422	G-A	Hetero	INTRON
SBS	Chr7	4244600	T-C	Hetero	INTRON
SBS	Chr7	5780300	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g070500
SBS	Chr8	2090376	G-A	Homo	INTRON
SBS	Chr8	12773745	G-A	Hetero	INTERGENIC
SBS	Chr8	27257026	C-T	Hetero	INTERGENIC
SBS	Chr9	4935176	G-T	Hetero	INTRON
SBS	Chr9	4935177	A-T	Hetero	INTRON
SBS	Chr9	8175800	G-A	Hetero	INTERGENIC
SBS	Chr9	20521223	G-T	Homo	INTERGENIC
SBS	Chr9	22692267	C-G	Homo	INTERGENIC
SBS	Chr9	22707854	T-C	Homo	INTERGENIC
SBS	Chr10	3140361	C-G	Homo	INTERGENIC
SBS	Chr10	18310436	A-T	Homo	UTR_5_PRIME
SBS	Chr10	18910761	G-A	Hetero	INTERGENIC
SBS	Chr11	6708150	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g079600
SBS	Chr11	8344785	G-A	Hetero	INTERGENIC
SBS	Chr11	8606609	G-A	Hetero	INTERGENIC
SBS	Chr11	29356377	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	552912	552913	1
Deletion	Chr5	12394221	12394224	3
Deletion	Chr1	13467362	13467364	2
Deletion	Chr4	15223611	15223614	3	OsKitaake04g073100
Deletion	Chr9	16912451	16912520	69
Deletion	Chr5	17861487	17861493	6
Deletion	Chr10	19212118	19212121	3
Deletion	Chr9	20218555	20218563	8
Deletion	Chr7	21508306	21508316	10
Deletion	Chr3	28741665	28741667	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15299884	Chr1	1514334
Translocation	Chr10	18900979	Chr8	22925857	OsKitaake10g134900
Translocation	Chr10	18901789	Chr8	22925849	OsKitaake10g134900
Translocation	Chr9	22715153	Chr7	25761544	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes