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Mutant Information

Mutant Name	FN501-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN501-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15032619 T-A Hetero INTRON
SBS Chr1 21444867 A-G Hetero INTERGENIC
SBS Chr2 3907322 T-C Hetero UTR_3_PRIME
SBS Chr2 5642950 A-G Hetero INTERGENIC
SBS Chr2 14832477 G-A Hetero INTERGENIC
SBS Chr3 6901359 G-T Hetero INTERGENIC
SBS Chr3 14361269 T-A Hetero INTRON
SBS Chr3 17566834 A-G Hetero INTERGENIC
SBS Chr4 21860930 G-T Homo INTERGENIC
SBS Chr4 29335161 A-T Hetero INTERGENIC
SBS Chr5 448363 C-T Homo INTERGENIC
SBS Chr5 26472327 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g234800
SBS Chr6 2480922 T-C Hetero INTRON
SBS Chr6 2643439 C-A Hetero INTERGENIC
SBS Chr6 18459481 A-C Hetero INTERGENIC
SBS Chr7 6017728 G-T Hetero INTERGENIC
SBS Chr7 6803118 A-T Hetero INTERGENIC
SBS Chr7 19674389 G-A Homo INTERGENIC
SBS Chr7 19674392 G-A Homo INTERGENIC
SBS Chr7 26442914 T-A Hetero INTERGENIC
SBS Chr7 27964390 T-C Homo INTRON
SBS Chr8 7067850 A-G Homo INTERGENIC
SBS Chr8 16557872 T-A Hetero STOP_GAINED OsKitaake08g127100
SBS Chr8 21240554 A-G Hetero SPLICE_SITE_REGION
SBS Chr9 3353945 C-T Hetero INTERGENIC
SBS Chr9 10117746 C-T Hetero INTERGENIC
SBS Chr9 10280956 G-A Hetero INTRON
SBS Chr9 14100911 T-A Hetero INTRON
SBS Chr9 15181066 G-A Hetero INTERGENIC
SBS Chr9 18753432 G-A Hetero INTRON
SBS Chr9 22514857 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g205500
SBS Chr10 4741470 G-C Homo INTERGENIC
SBS Chr10 8553458 T-G Homo INTERGENIC
SBS Chr10 19127790 C-T Homo INTERGENIC
SBS Chr10 23162310 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g195250
SBS Chr11 21418372 C-T Homo SYNONYMOUS_CODING
SBS Chr12 13206486 G-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2907005 2907006 1 OsKitaake11g041100
Deletion Chr10 8521327 8521331 4
Deletion Chr9 10907477 10907603 126
Deletion Chr4 13925860 13925862 2
Deletion Chr12 15438630 15438635 5
Deletion Chr11 15713779 15713780 1
Deletion Chr7 17270838 17270930 92
Deletion Chr1 23181993 23181994 1
Deletion Chr4 24108266 24108268 2
Deletion Chr2 26708590 26708592 2
Deletion Chr2 35216152 35216154 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 22721793 22721796 2
Insertion Chr12 1093514 1093517 2
Insertion Chr5 5375575 5375620 44
Insertion Chr6 87853 87856 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 17804415 17928915 OsKitaake08g132800
Inversion Chr8 17804429 17928925 OsKitaake08g132800
Inversion Chr5 22201101 22782120
Inversion Chr5 22201114 22780427
Inversion Chr5 22555598 22809357
Inversion Chr5 22780420 22809322
Inversion Chr1 35895971 35978754 OsKitaake01g380300
Inversion Chr1 35895973 35978755 OsKitaake01g380300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15032619	T-A	Hetero	INTRON
SBS	Chr1	21444867	A-G	Hetero	INTERGENIC
SBS	Chr2	3907322	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	5642950	A-G	Hetero	INTERGENIC
SBS	Chr2	14832477	G-A	Hetero	INTERGENIC
SBS	Chr3	6901359	G-T	Hetero	INTERGENIC
SBS	Chr3	14361269	T-A	Hetero	INTRON
SBS	Chr3	17566834	A-G	Hetero	INTERGENIC
SBS	Chr4	21860930	G-T	Homo	INTERGENIC
SBS	Chr4	29335161	A-T	Hetero	INTERGENIC
SBS	Chr5	448363	C-T	Homo	INTERGENIC
SBS	Chr5	26472327	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g234800
SBS	Chr6	2480922	T-C	Hetero	INTRON
SBS	Chr6	2643439	C-A	Hetero	INTERGENIC
SBS	Chr6	18459481	A-C	Hetero	INTERGENIC
SBS	Chr7	6017728	G-T	Hetero	INTERGENIC
SBS	Chr7	6803118	A-T	Hetero	INTERGENIC
SBS	Chr7	19674389	G-A	Homo	INTERGENIC
SBS	Chr7	19674392	G-A	Homo	INTERGENIC
SBS	Chr7	26442914	T-A	Hetero	INTERGENIC
SBS	Chr7	27964390	T-C	Homo	INTRON
SBS	Chr8	7067850	A-G	Homo	INTERGENIC
SBS	Chr8	16557872	T-A	Hetero	STOP_GAINED	OsKitaake08g127100
SBS	Chr8	21240554	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr9	3353945	C-T	Hetero	INTERGENIC
SBS	Chr9	10117746	C-T	Hetero	INTERGENIC
SBS	Chr9	10280956	G-A	Hetero	INTRON
SBS	Chr9	14100911	T-A	Hetero	INTRON
SBS	Chr9	15181066	G-A	Hetero	INTERGENIC
SBS	Chr9	18753432	G-A	Hetero	INTRON
SBS	Chr9	22514857	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g205500
SBS	Chr10	4741470	G-C	Homo	INTERGENIC
SBS	Chr10	8553458	T-G	Homo	INTERGENIC
SBS	Chr10	19127790	C-T	Homo	INTERGENIC
SBS	Chr10	23162310	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g195250
SBS	Chr11	21418372	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	13206486	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2907005	2907006	1	OsKitaake11g041100
Deletion	Chr10	8521327	8521331	4
Deletion	Chr9	10907477	10907603	126
Deletion	Chr4	13925860	13925862	2
Deletion	Chr12	15438630	15438635	5
Deletion	Chr11	15713779	15713780	1
Deletion	Chr7	17270838	17270930	92
Deletion	Chr1	23181993	23181994	1
Deletion	Chr4	24108266	24108268	2
Deletion	Chr2	26708590	26708592	2
Deletion	Chr2	35216152	35216154	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	17804415	17928915	OsKitaake08g132800
Inversion	Chr8	17804429	17928925	OsKitaake08g132800
Inversion	Chr5	22201101	22782120
Inversion	Chr5	22201114	22780427
Inversion	Chr5	22555598	22809357
Inversion	Chr5	22780420	22809322
Inversion	Chr1	35895971	35978754	OsKitaake01g380300
Inversion	Chr1	35895973	35978755	OsKitaake01g380300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes