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Mutant Information

Mutant Name	FN502-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN502-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14034361 A-G Hetero INTERGENIC
SBS Chr1 18731511 A-T Hetero INTERGENIC
SBS Chr1 30647903 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g303600
SBS Chr1 36856517 T-A Hetero UTR_5_PRIME
SBS Chr2 4936509 T-G Hetero INTRON
SBS Chr2 5286435 T-A Hetero INTERGENIC
SBS Chr2 13677329 T-C Hetero INTERGENIC
SBS Chr2 20892528 C-A Homo INTERGENIC
SBS Chr2 36649705 C-T Hetero UTR_3_PRIME
SBS Chr3 7794375 C-A Hetero INTRON
SBS Chr3 9681475 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g131800
SBS Chr3 18445095 C-T Homo INTRON
SBS Chr3 25163003 A-C Homo INTERGENIC
SBS Chr3 36061762 C-T Hetero INTERGENIC
SBS Chr4 2579406 T-G Hetero INTERGENIC
SBS Chr4 18304181 C-T Hetero INTERGENIC
SBS Chr4 30019156 T-G Hetero UTR_3_PRIME
SBS Chr5 4562550 C-T Homo INTERGENIC
SBS Chr5 4562555 G-T Homo INTERGENIC
SBS Chr5 4562556 G-T Homo INTERGENIC
SBS Chr5 8341358 C-T Homo INTERGENIC
SBS Chr5 10658879 G-A Hetero INTERGENIC
SBS Chr6 14367777 T-C Homo INTERGENIC
SBS Chr6 22178036 T-A Homo INTERGENIC
SBS Chr7 6391236 G-A Hetero INTERGENIC
SBS Chr8 7510266 C-T Hetero INTERGENIC
SBS Chr8 15515191 A-T Hetero INTRON
SBS Chr8 16578381 G-A Hetero INTERGENIC
SBS Chr8 18404661 C-T Hetero INTERGENIC
SBS Chr9 10193408 T-G Homo INTERGENIC
SBS Chr10 22595016 C-T Homo INTERGENIC
SBS Chr12 10143330 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 697001 763000 65999 4
Deletion Chr4 789604 789613 9
Deletion Chr4 1659001 1734000 74999 4
Deletion Chr8 2704318 2704327 9
Deletion Chr11 3565979 3565983 4
Deletion Chr5 7449001 7572000 122999 12
Deletion Chr6 8125111 8125116 5
Deletion Chr8 12823002 12823003 1
Deletion Chr11 13570101 13570113 12
Deletion Chr6 14456557 14456560 3
Deletion Chr6 16349432 16349433 1
Deletion Chr10 19175829 19175832 3
Deletion Chr4 24801936 24801937 1
Deletion Chr4 25671153 25671155 2
Deletion Chr6 26473644 26473658 14
Deletion Chr11 29580240 29580245 5
Deletion Chr2 35674291 35674302 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26680992 26680995 2
Insertion Chr2 35083963 35083966 2
Insertion Chr8 21405234 21405237 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 21093016 21948328
Inversion Chr1 21948341 22748587

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4000476 Chr1 22747016
Translocation Chr10 4000499 Chr1 22748567
Translocation Chr7 18397506 Chr4 33971954 OsKitaake04g283300
Translocation Chr7 18398493 Chr4 33971951 OsKitaake04g283300
Translocation Chr8 18525130 Chr7 19798751

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14034361	A-G	Hetero	INTERGENIC
SBS	Chr1	18731511	A-T	Hetero	INTERGENIC
SBS	Chr1	30647903	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g303600
SBS	Chr1	36856517	T-A	Hetero	UTR_5_PRIME
SBS	Chr2	4936509	T-G	Hetero	INTRON
SBS	Chr2	5286435	T-A	Hetero	INTERGENIC
SBS	Chr2	13677329	T-C	Hetero	INTERGENIC
SBS	Chr2	20892528	C-A	Homo	INTERGENIC
SBS	Chr2	36649705	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	7794375	C-A	Hetero	INTRON
SBS	Chr3	9681475	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g131800
SBS	Chr3	18445095	C-T	Homo	INTRON
SBS	Chr3	25163003	A-C	Homo	INTERGENIC
SBS	Chr3	36061762	C-T	Hetero	INTERGENIC
SBS	Chr4	2579406	T-G	Hetero	INTERGENIC
SBS	Chr4	18304181	C-T	Hetero	INTERGENIC
SBS	Chr4	30019156	T-G	Hetero	UTR_3_PRIME
SBS	Chr5	4562550	C-T	Homo	INTERGENIC
SBS	Chr5	4562555	G-T	Homo	INTERGENIC
SBS	Chr5	4562556	G-T	Homo	INTERGENIC
SBS	Chr5	8341358	C-T	Homo	INTERGENIC
SBS	Chr5	10658879	G-A	Hetero	INTERGENIC
SBS	Chr6	14367777	T-C	Homo	INTERGENIC
SBS	Chr6	22178036	T-A	Homo	INTERGENIC
SBS	Chr7	6391236	G-A	Hetero	INTERGENIC
SBS	Chr8	7510266	C-T	Hetero	INTERGENIC
SBS	Chr8	15515191	A-T	Hetero	INTRON
SBS	Chr8	16578381	G-A	Hetero	INTERGENIC
SBS	Chr8	18404661	C-T	Hetero	INTERGENIC
SBS	Chr9	10193408	T-G	Homo	INTERGENIC
SBS	Chr10	22595016	C-T	Homo	INTERGENIC
SBS	Chr12	10143330	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	697001	763000	65999	4
Deletion	Chr4	789604	789613	9
Deletion	Chr4	1659001	1734000	74999	4
Deletion	Chr8	2704318	2704327	9
Deletion	Chr11	3565979	3565983	4
Deletion	Chr5	7449001	7572000	122999	12
Deletion	Chr6	8125111	8125116	5
Deletion	Chr8	12823002	12823003	1
Deletion	Chr11	13570101	13570113	12
Deletion	Chr6	14456557	14456560	3
Deletion	Chr6	16349432	16349433	1
Deletion	Chr10	19175829	19175832	3
Deletion	Chr4	24801936	24801937	1
Deletion	Chr4	25671153	25671155	2
Deletion	Chr6	26473644	26473658	14
Deletion	Chr11	29580240	29580245	5
Deletion	Chr2	35674291	35674302	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	21093016	21948328
Inversion	Chr1	21948341	22748587

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes