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Mutant Information

Mutant Name	FN503-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN503-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3777397 G-T Hetero INTERGENIC
SBS Chr1 12551513 C-T Hetero INTERGENIC
SBS Chr1 18910221 C-T Homo INTERGENIC
SBS Chr1 21337626 C-T Hetero INTRON
SBS Chr1 21349522 A-G Hetero INTRON
SBS Chr1 22007500 C-T Hetero INTERGENIC
SBS Chr1 27145022 C-T Homo INTERGENIC
SBS Chr2 35710990 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g375600
SBS Chr3 13287151 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 27062035 G-A Homo INTRON
SBS Chr3 27360910 T-C Hetero INTERGENIC
SBS Chr3 29256975 G-A Homo START_GAINED
SBS Chr4 3894018 C-A Homo INTERGENIC
SBS Chr4 4219696 C-T Hetero INTERGENIC
SBS Chr5 6366701 C-A Homo INTERGENIC
SBS Chr5 21624944 G-T Hetero INTERGENIC
SBS Chr5 24572448 G-C Hetero INTERGENIC
SBS Chr5 26637909 G-A Hetero INTERGENIC
SBS Chr6 5417536 A-G Homo INTRON
SBS Chr6 19634751 C-T Hetero UTR_3_PRIME
SBS Chr6 21787657 A-G Hetero INTRON
SBS Chr6 30644528 G-A Hetero INTERGENIC
SBS Chr7 12110391 T-A Hetero INTERGENIC
SBS Chr7 12254799 C-T Hetero INTERGENIC
SBS Chr7 25449160 T-A Hetero INTERGENIC
SBS Chr8 8370237 A-G Hetero INTERGENIC
SBS Chr8 8545879 T-C Hetero INTERGENIC
SBS Chr8 19118600 G-A Homo INTRON
SBS Chr9 9128531 G-A Hetero INTERGENIC
SBS Chr10 2368717 C-T Homo INTERGENIC
SBS Chr10 8394276 C-T Hetero INTERGENIC
SBS Chr11 20784916 G-A Homo INTERGENIC
SBS Chr11 24086371 C-G Hetero INTERGENIC
SBS Chr12 10580437 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 921179 921184 5 OsKitaake05g011200
Deletion Chr5 2549985 2549987 2
Deletion Chr1 5356290 5356301 11
Deletion Chr3 5917777 5917780 3 OsKitaake03g084000
Deletion Chr4 7422001 7911000 488999 32
Deletion Chr6 7489307 7489308 1
Deletion Chr9 8386469 8386595 126
Deletion Chr1 8681515 8681516 1
Deletion Chr5 8882492 8882496 4
Deletion Chr7 12917827 12917912 85
Deletion Chr9 16362737 16362738 1
Deletion Chr4 19186251 19186254 3
Deletion Chr1 22725741 22725742 1
Deletion Chr2 24171874 24171875 1
Deletion Chr5 25243001 25269000 25999 4
Deletion Chr1 25443001 25463000 19999 2
Deletion Chr1 28334274 28334276 2
Deletion Chr1 28887185 28887197 12
Deletion Chr4 32033364 32033367 3
Deletion Chr1 41148124 41148126 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 5240564 5240567 2
Insertion Chr10 17115726 17115729 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7419473 8017786
Inversion Chr8 18299309 19074252 2
Inversion Chr8 18299339 19074271 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3777397	G-T	Hetero	INTERGENIC
SBS	Chr1	12551513	C-T	Hetero	INTERGENIC
SBS	Chr1	18910221	C-T	Homo	INTERGENIC
SBS	Chr1	21337626	C-T	Hetero	INTRON
SBS	Chr1	21349522	A-G	Hetero	INTRON
SBS	Chr1	22007500	C-T	Hetero	INTERGENIC
SBS	Chr1	27145022	C-T	Homo	INTERGENIC
SBS	Chr2	35710990	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g375600
SBS	Chr3	13287151	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	27062035	G-A	Homo	INTRON
SBS	Chr3	27360910	T-C	Hetero	INTERGENIC
SBS	Chr3	29256975	G-A	Homo	START_GAINED
SBS	Chr4	3894018	C-A	Homo	INTERGENIC
SBS	Chr4	4219696	C-T	Hetero	INTERGENIC
SBS	Chr5	6366701	C-A	Homo	INTERGENIC
SBS	Chr5	21624944	G-T	Hetero	INTERGENIC
SBS	Chr5	24572448	G-C	Hetero	INTERGENIC
SBS	Chr5	26637909	G-A	Hetero	INTERGENIC
SBS	Chr6	5417536	A-G	Homo	INTRON
SBS	Chr6	19634751	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	21787657	A-G	Hetero	INTRON
SBS	Chr6	30644528	G-A	Hetero	INTERGENIC
SBS	Chr7	12110391	T-A	Hetero	INTERGENIC
SBS	Chr7	12254799	C-T	Hetero	INTERGENIC
SBS	Chr7	25449160	T-A	Hetero	INTERGENIC
SBS	Chr8	8370237	A-G	Hetero	INTERGENIC
SBS	Chr8	8545879	T-C	Hetero	INTERGENIC
SBS	Chr8	19118600	G-A	Homo	INTRON
SBS	Chr9	9128531	G-A	Hetero	INTERGENIC
SBS	Chr10	2368717	C-T	Homo	INTERGENIC
SBS	Chr10	8394276	C-T	Hetero	INTERGENIC
SBS	Chr11	20784916	G-A	Homo	INTERGENIC
SBS	Chr11	24086371	C-G	Hetero	INTERGENIC
SBS	Chr12	10580437	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	921179	921184	5	OsKitaake05g011200
Deletion	Chr5	2549985	2549987	2
Deletion	Chr1	5356290	5356301	11
Deletion	Chr3	5917777	5917780	3	OsKitaake03g084000
Deletion	Chr4	7422001	7911000	488999	32
Deletion	Chr6	7489307	7489308	1
Deletion	Chr9	8386469	8386595	126
Deletion	Chr1	8681515	8681516	1
Deletion	Chr5	8882492	8882496	4
Deletion	Chr7	12917827	12917912	85
Deletion	Chr9	16362737	16362738	1
Deletion	Chr4	19186251	19186254	3
Deletion	Chr1	22725741	22725742	1
Deletion	Chr2	24171874	24171875	1
Deletion	Chr5	25243001	25269000	25999	4
Deletion	Chr1	25443001	25463000	19999	2
Deletion	Chr1	28334274	28334276	2
Deletion	Chr1	28887185	28887197	12
Deletion	Chr4	32033364	32033367	3
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7419473	8017786
Inversion	Chr8	18299309	19074252	2
Inversion	Chr8	18299339	19074271	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes